Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03158 ATGGCGACGTACTTTCATGGAAGCACTTCGGAGATTCAATCTTCTGCAGATGGCTTGCAAACGCTTTACCTTATGAACCCATCTTACGTACCTTATGCTGACGCGCCGCACCACCCAACACTTCTCGTCAATTCCAACGCTACCAACGCGCTCAACCTCGCCACTCTCACCCACGCGCCGCCGGTGTCGCCTTCCCCCAACCAGCAGCAGCACGTGATTCACGGCGTCGCAAACATCCTCGGATCCGGGAATTCCGATGACCACGCTCACACCCGACCGTCGTTGTTCGGGGAAAACATCGCCGCTTTCCACGGCTTCTCCGGCGTGGCCTCCTCCGCCGCCGCCCCTCGCCTTCACTATAACCTCTGGGGCTCGGGGGTTGATCAACCTGGAACGCCTTCTAGCAGCTCCGGCGGTGGCGGTTTCCGGCGGCCCAGTCAGCAGGGGTTGTCTCTCAGCCTTTCTTCACAGCAAACGAATTTCAGGTCAGTTTCTGGCGAGCTTGATATTGCCGGACAGGGCCACGTCGCCGGAACCGGGAACTCGCCGTCGTCGGCTGCGTCGACAGGAGTTTCCGGCCTGATTCTGGGGTCGAAGTATCTGAAAGCCGCGCAGGAGCTTCTGGATGAAGTTGTTAACGTAGGAAAAGGAATCTACAAAGAGGAAAAGTTCTCAGAGAAGGTGAAAGCGAGTAGAGAATCTAATAATTCCGGTGCTGGTGGTGGCGATGGCTCGAGTGGTGGAGGAGAAAACAGTGCAGGGAAACAAGTGGTCGAACTCAGCACCGCTCAAAGACAAGAACTTCAGATGAAGAAGTCGAAGCTTGTGAACATGCTCGATGAGGTGGAACAAAGGTACAGGCAATATCACCACCAAATGCAAATTGTGGTATCATCGTTTGAGCAAGCTGCGGGTTATGGAGCTGCAAAATCATACACTGCCCTTGCCCTAAGGACTATCTCAAAGCAATTCCGGTGCCTTAAAGATGCAATCTCTGCGCAAATCAAAGCCACGAGCAAGACATTGGGTGAAGATGATTGCTTGGGAGTGAAAGTTGAAGGGTCAAGGCTGAGATATGTTGATCACCATCTCAGGCAACAAAGGGCACTGCAGCAGCTAGGAATGATTCAGCCCAATGCATGGAGGCCACAAAGAGGCTTGCCAGAACGCGCCGTTTCAATTCTTCGCGCTTGGCTTTTTGAGCATTTTCTTCACCCCTATCCAAAGGACTCCGATAAAGTCATGCTTGCTAAACAAACTGGACTGGCTAGAAGCCAGGTGTCAAACTGGTTCATCAATGCCCGGGTTCGGCTGTGGAAGCCAATGGTTGAAGAAATGTACATGGAAGAAATGAAAGATCATGAACAAGCTAACGGCTCAGAAAACACCAGATCGAAAGAACTGAACAAGGAGTTGGGATCAACAGCAAATGTTGCACCAGAATCAGGAGCCATTAAACGAGACAATCTTCAACCAAAGCAAGATAGCTTCAACAACCAAAACACTTCTCCAAATGAAATCTCAGCAAACTCTTCAATGTCTCCTATGGGAGGGTCCCTTCAATCCCACTCCGGTTTTCATCTTGCAGGATCATCCGAGGTGCATACGAGTCCCAACAAACCAAGAAGTTCTGAAATGCAAAACTCTCCAAGTAGTATCCTCTCAGTGGACATGGAAATGAAGCACAATATTGGTGAGCATGCAAACACCAGAGAAGCAATTGAAAGGCACCACAAAGATGGATACCCTTTGATGAGTGGCAATGCAAACCATAGTGGGGGTTTTGGAGCGTTCACCATGGAAGACATCGGAAACAGGTTCAACGTCAGCACTGAGCAACTGGCTTCAAGGTTCCATGGAAATGGTGTTTCTCTCACACTAGGCCTTCCCCACAATGAAAACCTTTCTATGTCAGGAACTCCGCATGGATTTCTCTCACAGAATATTCATTTGGGAAGGAGACTTGAGATGGGAACGAGTGGGAACGAGTTTTGTTCTATCAACACTCCACCTTCGTCTCACTCGGGAACAACTTATGAGAGCATTGACATTCAAAACAGAAAGAGGTTTGTTGCTCAGTTATTACCTGATTTCGTGGCCTAA 2103 0.4983 MATYFHGSTSEIQSSADGLQTLYLMNPSYVPYADAPHHPTLLVNSNATNALNLATLTHAPPVSPSPNQQQHVIHGVANILGSGNSDDHAHTRPSLFGENIAAFHGFSGVASSAAAPRLHYNLWGSGVDQPGTPSSSSGGGGFRRPSQQGLSLSLSSQQTNFRSVSGELDIAGQGHVAGTGNSPSSAASTGVSGLILGSKYLKAAQELLDEVVNVGKGIYKEEKFSEKVKASRESNNSGAGGGDGSSGGGENSAGKQVVELSTAQRQELQMKKSKLVNMLDEVEQRYRQYHHQMQIVVSSFEQAAGYGAAKSYTALALRTISKQFRCLKDAISAQIKATSKTLGEDDCLGVKVEGSRLRYVDHHLRQQRALQQLGMIQPNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLARSQVSNWFINARVRLWKPMVEEMYMEEMKDHEQANGSENTRSKELNKELGSTANVAPESGAIKRDNLQPKQDSFNNQNTSPNEISANSSMSPMGGSLQSHSGFHLAGSSEVHTSPNKPRSSEMQNSPSSILSVDMEMKHNIGEHANTREAIERHHKDGYPLMSGNANHSGGFGAFTMEDIGNRFNVSTEQLASRFHGNGVSLTLGLPHNENLSMSGTPHGFLSQNIHLGRRLEMGTSGNEFCSINTPPSSHSGTTYESIDIQNRKRFVAQLLPDFVA 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03158 700 CDD homeodomain 381 441 IPR001356 GO:0003677
Viun5g03158 700 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 129 465 - -
Viun5g03158 700 Coils Coil 265 292 - -
Viun5g03158 700 MobiDBLite consensus disorder prediction 489 551 - -
Viun5g03158 700 SMART HOX_1 381 445 IPR001356 GO:0003677
Viun5g03158 700 Pfam Associated with HOX 195 332 IPR006563 -
Viun5g03158 700 ProSiteProfiles 'Homeobox' domain profile. 378 441 IPR001356 GO:0003677
Viun5g03158 700 SMART prehox3 189 333 IPR006563 -
Viun5g03158 700 MobiDBLite consensus disorder prediction 129 158 - -
Viun5g03158 700 SUPERFAMILY Homeodomain-like 382 449 IPR009057 -
Viun5g03158 700 Gene3D - 384 463 - -
Viun5g03158 700 FunFam BEL1-like homeodomain protein 9 384 446 - -
Viun5g03158 700 MobiDBLite consensus disorder prediction 475 551 - -
Viun5g03158 700 Pfam Homeobox KN domain 398 437 IPR008422 GO:0003677|GO:0006355
Viun5g03158 700 MobiDBLite consensus disorder prediction 225 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03158 Viun-Chr5 42535957 42541233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03158 1 700 Homeobox Transcription Factor Family AT2G35940 45.059 1.17e-144 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Viun5g03158 POX 7e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03158 - - gmx:100779075 1123.23