Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03157 ATGACAGAAATTGAAATTCCTCAGTTTTATGCTTGTCCCATTTCGCTTCAGATCATGAAGGACCCTGTCACAACCGTTACGGGCATAACCTACGACAGAGAAAGCATAGAGTACTGGTTGCTGAAAGCCAAAGATTGCACGTGTCCAATCACAAAGCAACCATTGCCGCGAAACGCAGAGTTCTTAACCCCAAACCACACGCTTCGGAGGCTAATCCAAGCGTGGTGTTCAGCGAATGAAGCAAACGGTGTTGATCAGATTCCGACACCCAAATCCCCTCTTAGCAATGCCAACGTTGAGAAGCTCGTGAAGGATCTCGAAGTTTCTCCACGATTTCAAAGCGCAATGGAGAAGTTGCATAACCTTGCAGTGGAGAACGAGAGGAACAGAAGGTGTATGGCTTCAGCGGGTGTTGCAGAAGCTATGGTGCACGTCATCACGAAGAGTTTCACGCAGGGAAAAACGACGTCGTGCGTTGAGGAGGCTCTGAGGATTCTTCGTTTGCTTTGGAGCAGTGCCAATGTGGTGGACAATAACCACATGAAGCGCTTGGTATGTCAGAACTTTGACTTTCTGAACTCGTTGACTTGGGTTTTGCAGCTTCAAACTAAGAACAACCTCAAGGTAATAAACGAAGCATTACCTATATTGAAATTGACAATTGAAGCCAAAGATTCAACCCCTTTAGGGAACTTAGGGTTTGAATTCTTCAGAGTGGTTGTGAATGTGATGAAAAATAGAGAACTCTCTCAGCAAGCTGTTAAATCTGCATTGCATGTGCTTATAGAAACGTGTCCTTTGGGGAGAAATAGAACGAAGATAGTGGAAGCTGGTGCGGTGGAGGAGCTCGTTGAACTTGCACTTGAAAACCCAGAAAAGAATCTAACAGAACTGGTGTTCATACTTTTGGCGCATCTGTGTTCTTGTGCTGATGGGAGAGACCAGTTTCTGCAGCATGCTGCAGGAATTGCTGTGGTTTCCAAAAGGATCCTTAGGGTTTCTCCAACCACCGATGATCGAGCTCTTCATATATTTTCCTTGATTTCAAAGTTCTCAGCGTCTAACGAAGTCGTGCAAGAGATGCTGAGGGTTGGTGCTGTGTCAAAGCTTTGCATGGTGCTGCAAGCAGATTGTGCTTCCCATTTGAAAGAAAAGGCAAGAGGTGTACTCAGGCTACACTCCAAAACATGGAATAATTCTCCCTGTATTCAAGTATATTTGTTAACCAGATTCCGAAGGTGA 1242 0.4509 MTEIEIPQFYACPISLQIMKDPVTTVTGITYDRESIEYWLLKAKDCTCPITKQPLPRNAEFLTPNHTLRRLIQAWCSANEANGVDQIPTPKSPLSNANVEKLVKDLEVSPRFQSAMEKLHNLAVENERNRRCMASAGVAEAMVHVITKSFTQGKTTSCVEEALRILRLLWSSANVVDNNHMKRLVCQNFDFLNSLTWVLQLQTKNNLKVINEALPILKLTIEAKDSTPLGNLGFEFFRVVVNVMKNRELSQQAVKSALHVLIETCPLGRNRTKIVEAGAVEELVELALENPEKNLTELVFILLAHLCSCADGRDQFLQHAAGIAVVSKRILRVSPTTDDRALHIFSLISKFSASNEVVQEMLRVGAVSKLCMVLQADCASHLKEKARGVLRLHSKTWNNSPCIQVYLLTRFRR 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03157 413 SUPERFAMILY ARM repeat 115 386 IPR016024 -
Viun5g03157 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Viun5g03157 413 PANTHER WDSAM1 PROTEIN 3 404 IPR045185 GO:0061630
Viun5g03157 413 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Viun5g03157 413 SUPERFAMILY RING/U-box 3 84 - -
Viun5g03157 413 CDD RING-Ubox_PUB 7 55 IPR045210 -
Viun5g03157 413 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Viun5g03157 413 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Viun5g03157 413 Gene3D - 112 404 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03157 Viun-Chr5 42527379 42529002 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03157 3 403 U-box Gene Family AT2G35930 42.222 5.42e-106 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03157 - - gmx:100778547 724.546