Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03156 ATGGATGAAATTGAAATCCCTGCTCATTTTCTCTGCCCCATTTCGCTCCAACTCATGAGGGACCCTGTAACTGTTTGCACAGGAATCACTTACGATAGAGAGAACATAGAAAAGTGGTTGTTTTCATGCAAGAACAGCACATGCCCCGTTACCAAGCAGTGTTTATTGGACCATGATCTCACCCCAAACCACACTCTACGCAGGTTGATCCAATCTTGGTGCACCCTCAATGCCTCATTTGGAGTTGAACGCATTCCAACTCCAAAGTCACCGATCGACAGAACCCAGATTGTGAAACTCCTCACAGAAGCAAAGAGGTTCCCCGAGAAGCAACTCAAATGCCTCACGAGGCTTCGATCCATTGCCTTCGAGGGTCAAAGGAACAAGGCTTGTTTAGAGTCTGCAGGAGTTGTTGAATTCTTGGCCTCAACCATGAAGCACAAGACAGAAGAAAACTCAATTGTTCTCTCTGAAGCAGCTATAGAAGTCTTGTTCCACCTTACCCCTTCCGAGGCTCAGCTCAAAGCCCTCATATACAACGAGGGGTTTCAGTTTATTGAGTCATTGTTGCACGTGTTGAGGCTTGGAAACTACCAATCCAGAGCTTATGCCACCATGCTTCTTAGATCGGCATTGGAGGTGGCTGATCCTATCCAATTGATCAGTGTGAAAACAGTGCTGTTTGTGGAAATCTTGCGCGTGCTGCGTGACCAGATTTCGCAACAGGCTTCAAAGGCTGCATTGAAGCTGATTGTGGAGCTTTTTCCGTGGGGCAGAAACAGGATCAAAGGGGTTGAGGGTGGTGCAGTTTCGGTCCTCATTGAGCTTCTTCTTTGTACCTCGGAAAGAAGAACCTGTGAACTCATTTTAATAGCTTTGGATCAACTTTGCGGGTGTGCAGAAGGGCGTGCAGAGTTGTTGAACCATGGTGCAGGAGTGGCCATTGTGTCAAAGAAAATTCTAAGGGTCTCTCTGGTGGCGAGTGATAGAGGGGTCAGAATTTTGGCCTCCATTTGTAGGTATTCCGCCAATGCAAGAGTGCTCCATGAAATGTTGCAGGTTGGGGCTGTGTCAAAGTTGTGTTTGGTTCTTCAAGTGAATTGCAGTTTCAAGACCAAAGAGAGGGCCAAGGAAATACTCAGATTGCACTCCTCAGTTTGGAAGAATTCTCCATGTATTCCTGTTCCATTGTTATCTTCTTTTCCTTGA 1209 0.4648 MDEIEIPAHFLCPISLQLMRDPVTVCTGITYDRENIEKWLFSCKNSTCPVTKQCLLDHDLTPNHTLRRLIQSWCTLNASFGVERIPTPKSPIDRTQIVKLLTEAKRFPEKQLKCLTRLRSIAFEGQRNKACLESAGVVEFLASTMKHKTEENSIVLSEAAIEVLFHLTPSEAQLKALIYNEGFQFIESLLHVLRLGNYQSRAYATMLLRSALEVADPIQLISVKTVLFVEILRVLRDQISQQASKAALKLIVELFPWGRNRIKGVEGGAVSVLIELLLCTSERRTCELILIALDQLCGCAEGRAELLNHGAGVAIVSKKILRVSLVASDRGVRILASICRYSANARVLHEMLQVGAVSKLCLVLQVNCSFKTKERAKEILRLHSSVWKNSPCIPVPLLSSFP 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03156 402 Gene3D - 95 389 IPR011989 -
Viun5g03156 402 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Viun5g03156 402 CDD RING-Ubox_PUB 7 60 IPR045210 -
Viun5g03156 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 81 IPR013083 -
Viun5g03156 402 PANTHER WDSAM1 PROTEIN 3 394 IPR045185 GO:0061630
Viun5g03156 402 FunFam RING-type E3 ubiquitin transferase 1 83 - -
Viun5g03156 402 SUPERFAMILY ARM repeat 109 386 IPR016024 -
Viun5g03156 402 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Viun5g03156 402 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Viun5g03156 402 SUPERFAMILY RING/U-box 3 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03156 Viun-Chr5 42518580 42520438 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03156 2 402 U-box Gene Family AT2G35930 56.049 3.29e-164 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03156 - - gmx:100778012 722.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03156 5 42518580 42520438 Viun11g01655 11 32793586 32795366 PCT