Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03143 ATGGGTGTATCAGGGAAATGGATTAGAGCATTGATTGGTCTAAAGAAATCAGAAAAGCCAGAGTCTTCTCAGAAGGACGGAAATGTTGGCAAGTTACATCATCAACGAAGGCAAGCTGTTGAATTTGATAATGGTAAACTTTCAAACGAATTGGATTGTGAAGCTACTCCACCTATTGGAGATGATAATGTCCGTGCAAACCTTGATGCCCATTATTCGTCTTCTTCTTCCCAACAAGCACCTGATGCTGCACATGATCAACAGATGAGGGAGGAACGGGCGGCAATACACATTCAAACAGCATTTCGAGGATTTTTGGCCAGAAGAGCATTACGAGCCTTGAAAGGTGTGGTAAGGCTTCAGGCCCTAGTAAGAGGCCATGCAGTGAGAAAACAAGCAGCAATAACACTCCGTTGTATGCAAGCTTTGGTGAGGGTTCAAGCTCGTGTTCGGGCAAGGCGTGTTTGCATGGCTTTGGAAACTCAAGCATCACAACAGAAACTTCAGCAAAACCTTGCAAATGAAGCTCGAGTTCGAGAAATAGAAGAAGGATGGTGTGATAGTGTAGGATCTGTTGAAGATATTCAGGCTAAGATATTGAAGAGACAGGAGGCTGCAGCAAAACGTGAGAGAGCCATGGCATATGCTCTATCTCATCAGTGGCAGGCAGGATCAAGACAACAGCCAGTTTCCTCTGGATTTGAACCAGACAAAAGTAGCTGGGGTTGGAATTGGTTAGAAAGATGGATGGCTGTCCGGCCTTGGGAGAACCGCTTTGTTGACATTAATGTGAAGGATGGGGTAACTGTGCATGAAAATGAAGCTAAGGATGGTAAAAGTGGAACCACACCTCAGTTGAGCTCTGCTAACAAGAAACCATTCTCATCAAACACACATCCAAAACCAGCAAATCATGGAACTGGTCCCACTATTTCTGATGAGTGTGATTCTTCACCTAGTAAGTCTGCTGGTTTGCTAGAATCATCAAAAACACAATCCGTTAAGCTAACTCCTAAGGGTAATGTTGAAAATGCTGCTGAAGAAGTGAACTCAAAACTTAGAATTGGGTCAAGATCTCACAGTAATCCAAAGGAGAGAACATCCCAGGTAGATAAGCAGGCGAAAAAACGATTATCTCTGCCTAACAATGGGGGTGGTGCAGGATCTCAAATAGTCAAACACCCGATTAGTACTACTAACGTGAAAGGGACGCTAAGCACACACAAGTCTAGTAGGGATAAGCCTAAGCTCAATGGAAGAAGGGATGTGAATACAAAATCAGATCCATAG 1290 0.438 MGVSGKWIRALIGLKKSEKPESSQKDGNVGKLHHQRRQAVEFDNGKLSNELDCEATPPIGDDNVRANLDAHYSSSSSQQAPDAAHDQQMREERAAIHIQTAFRGFLARRALRALKGVVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVCMALETQASQQKLQQNLANEARVREIEEGWCDSVGSVEDIQAKILKRQEAAAKRERAMAYALSHQWQAGSRQQPVSSGFEPDKSSWGWNWLERWMAVRPWENRFVDINVKDGVTVHENEAKDGKSGTTPQLSSANKKPFSSNTHPKPANHGTGPTISDECDSSPSKSAGLLESSKTQSVKLTPKGNVENAAEEVNSKLRIGSRSHSNPKERTSQVDKQAKKRLSLPNNGGGAGSQIVKHPISTTNVKGTLSTHKSSRDKPKLNGRRDVNTKSDP 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03143 429 Gene3D - 88 133 - -
Viun5g03143 429 SMART iq_5 113 134 IPR000048 GO:0005515
Viun5g03143 429 SMART iq_5 90 112 IPR000048 GO:0005515
Viun5g03143 429 Pfam IQ calmodulin-binding motif 115 132 IPR000048 GO:0005515
Viun5g03143 429 Pfam IQ calmodulin-binding motif 92 112 IPR000048 GO:0005515
Viun5g03143 429 MobiDBLite consensus disorder prediction 392 406 - -
Viun5g03143 429 MobiDBLite consensus disorder prediction 358 373 - -
Viun5g03143 429 ProSiteProfiles IQ motif profile. 91 119 IPR000048 GO:0005515
Viun5g03143 429 ProSiteProfiles IQ motif profile. 115 142 IPR000048 GO:0005515
Viun5g03143 429 PANTHER IQ-DOMAIN 5-RELATED 1 386 - -
Viun5g03143 429 MobiDBLite consensus disorder prediction 279 339 - -
Viun5g03143 429 MobiDBLite consensus disorder prediction 71 90 - -
Viun5g03143 429 MobiDBLite consensus disorder prediction 15 43 - -
Viun5g03143 429 MobiDBLite consensus disorder prediction 272 429 - -
Viun5g03143 429 MobiDBLite consensus disorder prediction 407 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03143 Viun-Chr5 42432438 42438849 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03143 1 429 IQD Protein Family AT3G22190 54.920 1.32e-121 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03143 - - gmx:100781346 665.996