Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03140 ATGGGTGTATCAGGGAAATGGATTAGAGCATTGATTGGTCTAAAGAAATCAGAAAAGCCAGAGTCTTCTCAGAAGGACGGAAATAAGGTTGGCAAGTTACATCATCAACGAAGGCAAGCTGTTGAATTTGATAATGGTAAACTTTCAAACGAATTGGATTGTGAAGCTACTCCACCTATTGGAGATGATAATGTCCGTGCAAACCTTGATGCCCATTATTCGTCTTCTTCTTCCCAACAAGCACCTGATGCTGCACATGATCAACAGATGAGGGAGGAACGGGCGGCAATACACATTCAAACAGCATTTCGAGGATTTTTGGCCAGAAGAGCATTACGAGCCTTGAAAGGTGTGGTAAGGCTTCAGGCCCTAGTAAGAGGCCATGCAGTGAGAAAACAAGCAGCAATAACACTCCGTTGTATGCAAGCTTTGGTGAGGGTTCAAGCTCGTGTTCGGGCAAGGCGTGTTTGCATGGCTTTGGAAACTCAAGCATCACAACAGAAACTTCAGCAAAACCTTGCAAATGAAGCTCGAGTTCGAGAAATAGAAGAAGGATGGTGTGATAGTGTAGGATCTGTTGAAGATATTCAGGCTAAGATATTGAAGAGACAGGAGGCTGCAGCAAAACGTGAGAGAGCCATGGCATATGCTCTATCTCATCAGTGGCAGGCAGGATCAAGACAACAGCCAGTTTCCTCTGGATTTGAACCAGACAAAAGTAGCTGGGGTTGGAATTGGTTAGAAAGATGGATGGCTGTCCGGCCTTGGGAGAACCGCTTTGTTGACATTAATGTGAAGGATGGGGTAACTGTGCATGAAAATGAAGCTAAGGATGGTAAAAGTGGAACCACACCTCAGTTGAGCTCTGCTAACAAGAAACCATTCTCATCAAACACACATCCAAAACCAGCAAATCATGGAACTGGTCCCACTATTTCTGATGAGTGTGATTCTTCACCTAGTAAGTCTGCTGGTTTGCTAGAATCATCAAAAACACAATCCGTTAAGCTAACTCCTAAGGGTAATGTTGAAAATGCTGCTGAAGAAGTGAACTCAAAACTTAGAATTGGGTCAAGATCTCACAGTAATCCAAAGGAGAGAACATCCCAGGTAGATAAGCAGGCGAAAAAACGATTATCTCTGCCTAACAATGCAGGGGGTGGTGCAGGATCTCAAATAGTCAAACACCCGATTAGTACTACTAACGTGAAAGGGACGCTAAGCACACACAAGTCTAGTAGGGATAAGCCTAAGCTCAATGGAAGAAGGGATGTGAATACAAAATCAGATCCATAG 1296 0.4383 MGVSGKWIRALIGLKKSEKPESSQKDGNKVGKLHHQRRQAVEFDNGKLSNELDCEATPPIGDDNVRANLDAHYSSSSSQQAPDAAHDQQMREERAAIHIQTAFRGFLARRALRALKGVVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVCMALETQASQQKLQQNLANEARVREIEEGWCDSVGSVEDIQAKILKRQEAAAKRERAMAYALSHQWQAGSRQQPVSSGFEPDKSSWGWNWLERWMAVRPWENRFVDINVKDGVTVHENEAKDGKSGTTPQLSSANKKPFSSNTHPKPANHGTGPTISDECDSSPSKSAGLLESSKTQSVKLTPKGNVENAAEEVNSKLRIGSRSHSNPKERTSQVDKQAKKRLSLPNNAGGGAGSQIVKHPISTTNVKGTLSTHKSSRDKPKLNGRRDVNTKSDP 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03140 431 Pfam IQ calmodulin-binding motif 93 113 IPR000048 GO:0005515
Viun5g03140 431 Pfam IQ calmodulin-binding motif 116 133 IPR000048 GO:0005515
Viun5g03140 431 ProSiteProfiles IQ motif profile. 116 143 IPR000048 GO:0005515
Viun5g03140 431 PANTHER IQ-DOMAIN 5-RELATED 1 387 - -
Viun5g03140 431 MobiDBLite consensus disorder prediction 280 340 - -
Viun5g03140 431 MobiDBLite consensus disorder prediction 14 67 - -
Viun5g03140 431 MobiDBLite consensus disorder prediction 409 431 - -
Viun5g03140 431 SMART iq_5 114 135 IPR000048 GO:0005515
Viun5g03140 431 SMART iq_5 91 113 IPR000048 GO:0005515
Viun5g03140 431 Gene3D - 89 134 - -
Viun5g03140 431 MobiDBLite consensus disorder prediction 359 374 - -
Viun5g03140 431 ProSiteProfiles IQ motif profile. 92 120 IPR000048 GO:0005515
Viun5g03140 431 MobiDBLite consensus disorder prediction 14 44 - -
Viun5g03140 431 MobiDBLite consensus disorder prediction 394 408 - -
Viun5g03140 431 MobiDBLite consensus disorder prediction 273 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03140 Viun-Chr5 42432434 42438849 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03140 1 395 IQD Protein Family AT3G22190 57.500 4.93e-119 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03140 - - gmx:100781346 667.537