Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03128 ATGATGGTTAGTGTTCCATGCAGCAGTTTGCTCACCATTGTTACGGTTAGATGCGGACACTGTGCAAATCTGCTATCAGTTAACATGGGAGCATCACTTCAACCTTTTCCTTCTCAAGAAACTCAGCATCTTTCTACCGTTGCTAAGTTACAGAGACAGCACCTAAGTGTTCAAGAAGCATGCAGCAAGGAACTGGGATCATCTTCAAAATGCAAATCATTTGAGTCCGTAGAACATGAGCAACCTAGGATTCCTCCCATTCGTCCTCCAGAGAAGAGACAGCGTGTTCCTTCTGCTTATAACCGGTTCATTAAAGAGGAAATACAAAGAATCAAGGCTAGTAATCCAGATATCAGTCACAGAGAAGCTTTTAGCACAGCTGCAAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGCAATAAGCAAGGAAAGTTGGACCAGGGAGATGCTACTCAAAAGTCTAACGGATTTTACTGA 495 0.4303 MMVSVPCSSLLTIVTVRCGHCANLLSVNMGASLQPFPSQETQHLSTVAKLQRQHLSVQEACSKELGSSSKCKSFESVEHEQPRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQGKLDQGDATQKSNGFY 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03128 164 MobiDBLite consensus disorder prediction 72 96 - -
Viun5g03128 164 MobiDBLite consensus disorder prediction 144 164 - -
Viun5g03128 164 FunFam Axial regulator YABBY 86 157 - -
Viun5g03128 164 Pfam YABBY protein 1 141 IPR006780 GO:0007275
Viun5g03128 164 Gene3D High mobility group box domain 78 136 IPR036910 -
Viun5g03128 164 PANTHER PROTEIN YABBY 6-RELATED 1 150 IPR006780 GO:0007275
Viun5g03128 164 MobiDBLite consensus disorder prediction 73 90 - -
Viun5g03128 164 SUPERFAMILY HMG-box 84 134 IPR036910 -
Viun5g03128 164 CDD HMG-box_SF 95 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03128 Viun-Chr5 42374487 42381685 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03128 1 164 C2C2-YABBY Transcription Factor Family AT1G08465 65.089 1.21e-69 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Viun5g03128 YABBY 2.1e-60 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03128 K25796 - gmx:100785458 279.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03128 5 42374487 42381685 Viun11g01638 11 32656257 32663308 PCT