Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03127 ATGTCAATGGACATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCACTCTAGCGGTTAGTGTTCCATGCAGCAGTTTGCTCACCATTGTTACGGTTAGATGCGGACACTGTGCAAATCTGCTATCAGTTAACATGGGAGCATCACTTCAACCTTTTCCTTCTCAAGAAACTCAGCATCTTTCTACCGTTGCTAAGTTACAGAGACAGCACCTAAGTGTTCAAGAAGCATGCAGCAAGGAACTGGGATCATCTTCAAAATGCAAATCATTTGAGTCCGTAGAACATGAGCAACCTAGGATTCCTCCCATTCGTCCTCCAGAGAAGAGACAGCGTGTTCCTTCTGCTTATAACCGGTTCATTAAAGAGGAAATACAAAGAATCAAGGCTAGTAATCCAGATATCAGTCACAGAGAAGCTTTTAGCACAGCTGCAAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGCAATAAGCAAGGAAAGTTGGACCAGGGAGATGCTACTCAAAAGTCTAACGGATTTTACTGA 561 0.4349 MSMDMMATERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGASLQPFPSQETQHLSTVAKLQRQHLSVQEACSKELGSSSKCKSFESVEHEQPRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQGKLDQGDATQKSNGFY 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03127 186 CDD HMG-box_SF 117 153 - -
Viun5g03127 186 MobiDBLite consensus disorder prediction 166 186 - -
Viun5g03127 186 FunFam Axial regulator YABBY 108 179 - -
Viun5g03127 186 PANTHER PROTEIN YABBY 6-RELATED 1 172 IPR006780 GO:0007275
Viun5g03127 186 Gene3D High mobility group box domain 100 158 IPR036910 -
Viun5g03127 186 Pfam YABBY protein 7 163 IPR006780 GO:0007275
Viun5g03127 186 SUPERFAMILY HMG-box 106 156 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03127 Viun-Chr5 42372861 42381685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03127 1 186 C2C2-YABBY Transcription Factor Family AT1G08465 65.969 3.92e-82 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Viun5g03127 YABBY 4.6e-72 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03127 K25796 - gmx:100785458 331.257