Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03109 ATGTTGTTTTCATTTTCGAACCCTCCTTCTCTTGTCTACCCCTTATACATAAACATGACAACAATCTCTCTTCTCCACCAAAAACTCCAATCCATCTTCTTTTCCATCTGTTTGTTCTCACCCTCTCTTCCAAATTCACACCACAGAAGGAACAAGATGGAGACTCGTGCCGCCTCAAAGAGAAAGGCAAACGCTATGGTCTTGGTCCAAAAACAACACCCCAAAAGGCATAGGGTTTCGTTTGCTCAAAATCCTCCCAAAGAGAAATTGCAAGATGTGAAGAATCCCAATGCGAAGAAGCCATCTCCCACAACCTACCACTCTTCTTCCTCCCGAGATGAATCTCTTGTTTCCGATTTCTATGAGTATCTTCATGAAATGGAGATACAGAGAAAGAGGAGACCAATGGTTGACTACATTGAGAAAGTTCAGAAACTGTTTACGCCAACCATGAGAGGAATCTTGGTGGATTGGTTAGTAGAAGTGGGTGAGGAGTACAAGCTTCTCCCGGACACTCTTCATCTCTCTGTTTCTTACATTGATAGGTTCTTGTCTGTTAATCCTGTCACTAAATCCAGACTTCAGTTGCTGGGTGTTTCCTCCATGCTCATTGCATCCAAATACGAGGAAATCGATCCACCCTGTGTGGACGACTTTTGCAGTATTACCGATCACACATATGACAAGGAAGAGGTAGTTAAGATGGAAGCTGACATATTACAGTCACTGAAGTTTGAAATGGGAAATCCTACTGTGAACACATTTCTCAGGAGGTTTGCTGATGTTGCTTCTGATCACGAAATGACTCCAAATTCACAGATTGAATTTTTGAGTCACTATCTTGCTGAGTTAAGTTTGCTGGATTATGATTGTTTGAGATTTTTGCCTTCTGTTGTGGCAGCATCAGCTGTATTTCTTTCCAGATTTATTACCTCGCCTGAAGTACATCCATGGAGTTATTCTTTGAGTGAATGCTCAGGTTACAAACCAGCTGAATTGAAAGAATGTGTCAAAATATTGCATGACTTGTATTTGTTACGAAAGGCAGCATCCTTCAAAGCTGTTCGAGATAAGTACAAGCAGCAGAAGTTCAAATGCGTTGCAAACCTGTCTTCTCTTCCTTATATACCCAATTGTTACTTTGAAGATCTTTAA 1155 0.4104 MLFSFSNPPSLVYPLYINMTTISLLHQKLQSIFFSICLFSPSLPNSHHRRNKMETRAASKRKANAMVLVQKQHPKRHRVSFAQNPPKEKLQDVKNPNAKKPSPTTYHSSSSRDESLVSDFYEYLHEMEIQRKRRPMVDYIEKVQKLFTPTMRGILVDWLVEVGEEYKLLPDTLHLSVSYIDRFLSVNPVTKSRLQLLGVSSMLIASKYEEIDPPCVDDFCSITDHTYDKEEVVKMEADILQSLKFEMGNPTVNTFLRRFADVASDHEMTPNSQIEFLSHYLAELSLLDYDCLRFLPSVVAASAVFLSRFITSPEVHPWSYSLSECSGYKPAELKECVKILHDLYLLRKAASFKAVRDKYKQQKFKCVANLSSLPYIPNCYFEDL 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03109 384 MobiDBLite consensus disorder prediction 97 111 - -
Viun5g03109 384 Pfam Cyclin, C-terminal domain 250 372 IPR004367 -
Viun5g03109 384 ProSitePatterns Cyclins signature. 152 183 IPR006671 -
Viun5g03109 384 Gene3D - 133 248 - -
Viun5g03109 384 PIRSF Cyclin_A_B_D_E 40 376 IPR046965 GO:0016538|GO:0044772
Viun5g03109 384 FunFam G2/mitotic-specific cyclin 135 246 - -
Viun5g03109 384 PANTHER CYCLINS 97 367 IPR039361 -
Viun5g03109 384 MobiDBLite consensus disorder prediction 73 111 - -
Viun5g03109 384 Pfam Cyclin, N-terminal domain 119 247 IPR006671 -
Viun5g03109 384 CDD CYCLIN_AtCycA-like_rpt2 250 364 - -
Viun5g03109 384 Gene3D - 119 369 - -
Viun5g03109 384 FunFam Cyclin superfamily protein, putative 247 319 - -
Viun5g03109 384 SUPERFAMILY Cyclin-like 118 247 IPR036915 -
Viun5g03109 384 SUPERFAMILY Cyclin-like 250 374 IPR036915 -
Viun5g03109 384 SMART Cyclin_C_2 250 373 IPR004367 -
Viun5g03109 384 SMART cyclin_7 254 342 IPR013763 -
Viun5g03109 384 SMART cyclin_7 157 241 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03109 Viun-Chr5 42244945 42246514 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03109 55 384 Core Cell Cycle Gene Families AT5G43080 54.783 6.68e-125 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03109 K06627 - gmx:547779 510.375