Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03107 ATGGAGACTCGTGCCGCTTCAAAGAGAAAGGCAAACAGTATAGTCTTGGTCCAAAAACAACACCCCAAAAGGCATAGGGTTTCCTTCGCTCAAAATCCTCCCAAAGAGAAATTGCAAGATGCCAAGAAGCCATCTCCCACAACCACCCACTCTTCTTCCCCCCATATAGGTGAATCTCTTGTTTCCGATGTCTACGAGTATCTTCATGAGATGGAGATGCAGAAAAAGAGAAGACCAATTGTTGACTACATTGAGAAAGTTCAGAAACTGTTTACGCCAACCATGAGAGGAATCTTGGTGGATTGGTTAGTAGAAGTGGGTGAGGAGTACAAGCTTCTCCCGGACACTCTTCATCTCTCTGTTTCATACATTGATAGGTTTTTGTCTGTTAATCCTGTCACTAAATCCAGACTTCAGTTGCTGGGTGTTTCCTCCATGCTCATTGCATCCAAGTACGAGGAAATCGATCCACCCTGTGTGGACGACTTTTGCAGTATCACCGATCACACATATGACAAGGAAGAGGTAGTTAAGATGGAAGCTGACATATTACAGTCACTCAAGTTTGAAATGGGAAATCCTACTGTGAACACCTTTCTCAGGCGGTTTGTTGATGTTGCTTCTGATCATGAGATGACTCCAAATTCACAGATTGAATTTTTGAGTCAGTATCTTGCTGAGTTAAGTTTGCTGGATTATGATTGTTTAAGATTTTTGCCTTCTGTTGTGGCAGCATCAGCTGTATTTCTTTCCAGATTTATTATCTCGCCTGAAGTACATCCATGGAGTCATTCTTTGAGTGAATGCTCAGGTTACAAACCAGCTGAATTGAAAGAATGTGTCAAAACCTTGCATGACCTGTACTTGTTACGAAAAGCAGCATCCTTCGAAGCTGTCCGGGATAAGTACAAGCAGCAAAAGTTCAAATGCGTTGCAAACCTGTCTTCCCCTCCTTATGTACCAAATTCTTACTTTGAAGACTTCTAA 987 0.4215 METRAASKRKANSIVLVQKQHPKRHRVSFAQNPPKEKLQDAKKPSPTTTHSSSPHIGESLVSDVYEYLHEMEMQKKRRPIVDYIEKVQKLFTPTMRGILVDWLVEVGEEYKLLPDTLHLSVSYIDRFLSVNPVTKSRLQLLGVSSMLIASKYEEIDPPCVDDFCSITDHTYDKEEVVKMEADILQSLKFEMGNPTVNTFLRRFVDVASDHEMTPNSQIEFLSQYLAELSLLDYDCLRFLPSVVAASAVFLSRFIISPEVHPWSHSLSECSGYKPAELKECVKTLHDLYLLRKAASFEAVRDKYKQQKFKCVANLSSPPYVPNSYFEDF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03107 328 PANTHER CYCLINS 43 311 IPR039361 -
Viun5g03107 328 CDD CYCLIN_AtCycA-like_rpt2 194 308 - -
Viun5g03107 328 ProSitePatterns Cyclins signature. 96 127 IPR006671 -
Viun5g03107 328 PIRSF Cyclin_A_B_D_E 2 324 IPR046965 GO:0016538|GO:0044772
Viun5g03107 328 SUPERFAMILY Cyclin-like 194 318 IPR036915 -
Viun5g03107 328 Gene3D - 63 313 - -
Viun5g03107 328 SMART Cyclin_C_2 194 317 IPR004367 -
Viun5g03107 328 MobiDBLite consensus disorder prediction 1 56 - -
Viun5g03107 328 SUPERFAMILY Cyclin-like 60 191 IPR036915 -
Viun5g03107 328 FunFam Cyclin superfamily protein, putative 191 263 - -
Viun5g03107 328 Pfam Cyclin, N-terminal domain 63 191 IPR006671 -
Viun5g03107 328 Gene3D - 77 192 - -
Viun5g03107 328 FunFam G2/mitotic-specific cyclin 79 190 - -
Viun5g03107 328 Pfam Cyclin, C-terminal domain 194 316 IPR004367 -
Viun5g03107 328 SMART cyclin_7 101 185 IPR013763 -
Viun5g03107 328 SMART cyclin_7 198 286 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03107 Viun-Chr5 42231447 42233095 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03107 3 327 Core Cell Cycle Gene Families AT5G43080 55.523 6.97e-129 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03107 K06627 - gmx:547779 493.812