Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03104 ATGGAGACTCGTGCCGCTTCAAAGAGAAAGGCAAACAGTATGGTCTTGGTCCAAAAACAACACCCCAAAAGGCATAGGGTTTCCTTCGCTCAAAATTCTCCCATAGAGAAATTGGAAGATGCCAAGAAGCCATCTCCCACAGCCACCCACTCTTCTTCCCCCCATATAGGTGAATCTCTTGTTTCCGATGTCTTCCAGTATCTTCATGAAATGGAGATGCAGAAAAAGAGGAGACCAATGGTTGACTACATTGAGAAAGTTCAGGAACTGTTTACGCCAACCATGAGAGGAATCTTGGTGGATTGGTTAGTAGAAGTGGGTGAGGAGTACAAGCTTCTCCCGGACACTCTTCATCTCTCTGTTTCTTACATTGACAGGTTCTTGTCTGTTAATCCTGTCACTAAATCCAGACTTCAGTTGCTGGGTTTTTCCTCCATGCTCATTGCATCCAAATACGAGGAAATCGATCTACCCTGTGTGGACGACTTTTGCAGTATCACCGATCACACATATGACAAGGAAGAGGTTGTTAAGATGGAAGCTGACATATTACAGTCACTAAAGTTTGAAATGGGAAATCCTACTGTGAACACCTTTCTCAGGAGGTTTGTTGATGTTGCTTCTGATCAGGAAATGACTCCAAATTCACAGATTGAATTTTTGAGTCAGTATCTTGCTGAGTTAAGTTTGCTGGATTATGATTGTTTGAGATTTTTGCCTTCTGTTGTGGCAGCATCTGCTGTATTTCTTTCCAGATTTATCATCTCGCCTGAGGTACATCCATGGAGTTATTCTTTGAGTGAATGCTCAGGTTACAAACCAGCTGAATTGAAAGAATGTGTCGAAATCTTGCATGACCTGTATTTGTTACGAAAGGCAGCATCCTTCGAAGCTGTCAAGTACAAGCAGCAAAAGTTCAAATGCATTGCAAACCTGTCTTCTCCTCCTTATATACCCAATTGTTACTTTGAAGATGATCTTTAA 984 0.4187 METRAASKRKANSMVLVQKQHPKRHRVSFAQNSPIEKLEDAKKPSPTATHSSSPHIGESLVSDVFQYLHEMEMQKKRRPMVDYIEKVQELFTPTMRGILVDWLVEVGEEYKLLPDTLHLSVSYIDRFLSVNPVTKSRLQLLGFSSMLIASKYEEIDLPCVDDFCSITDHTYDKEEVVKMEADILQSLKFEMGNPTVNTFLRRFVDVASDQEMTPNSQIEFLSQYLAELSLLDYDCLRFLPSVVAASAVFLSRFIISPEVHPWSYSLSECSGYKPAELKECVEILHDLYLLRKAASFEAVKYKQQKFKCIANLSSPPYIPNCYFEDDL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03104 327 SUPERFAMILY Cyclin-like 60 191 IPR036915 -
Viun5g03104 327 Gene3D - 77 192 - -
Viun5g03104 327 Pfam Cyclin, N-terminal domain 63 191 IPR006671 -
Viun5g03104 327 FunFam G2/mitotic-specific cyclin 79 190 - -
Viun5g03104 327 ProSitePatterns Cyclins signature. 96 127 IPR006671 -
Viun5g03104 327 FunFam Cyclin superfamily protein, putative 191 263 - -
Viun5g03104 327 PANTHER CYCLINS 43 297 IPR039361 -
Viun5g03104 327 Pfam Cyclin, C-terminal domain 194 314 IPR004367 -
Viun5g03104 327 CDD CYCLIN_AtCycA-like_rpt2 194 306 - -
Viun5g03104 327 MobiDBLite consensus disorder prediction 1 56 - -
Viun5g03104 327 PIRSF Cyclin_A_B_D_E 1 319 IPR046965 GO:0016538|GO:0044772
Viun5g03104 327 SUPERFAMILY Cyclin-like 170 320 IPR036915 -
Viun5g03104 327 Gene3D - 63 311 - -
Viun5g03104 327 SMART cyclin_7 101 185 IPR013763 -
Viun5g03104 327 SMART cyclin_7 198 286 IPR013763 -
Viun5g03104 327 SMART Cyclin_C_2 194 315 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03104 Viun-Chr5 42201578 42202807 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03104 3 325 Core Cell Cycle Gene Families AT5G43080 53.061 7.48e-122 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03104 K06627 - gmx:547779 477.248