Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03098 ATGGCAAGAGGGGGTGGACTCTCCATTGATTCAGATCCAATTGGGAGCTTCTTCCCCCACAACCCAGTAGTTCTCAACTCTTTCCCTGAAGACGACAACAACACCATCATCAACAACAACAGCAGTGGCCAACAAAAGTGGAAACTTGGTCCCAACATGGATGCCACGGTTAGCAGAAACAGGTCTCCATCATCTTCTCCAAACAACAACAACACCTCCACCTCCACCATCCCTTTTCAAGTCAACCTTTCCTCTGATAACAAAAGGCCCCACATCGACGAGATGGACTTCTTCCCTAACAAGACCGATGATGATCATAAAAACGGCATAAATAACTTTGCCTCTGCCTCCACCTCTGCACCTCCCTCACTAGACCACCTTCTTCACACACATGATCATTCCTCCACTCCTGCTATGTTGGAATTGAAAGTAAACACTGGTCTGAATCTTCTTACCACCAACACCGGTAGTGATCATGCCATGGTGGACGATCAAACGTCCACTAATTCCGAAGAAAAAAGAGCCAAGAGTGAGATGGTTGTTCTTCAAGCTGAGCTTGAGAGAATGAAGGTGGAGAATCATAGGCTGAGGAACATGCTTGATCAGGTTAACACCAATTACAATGCCTTGCAGATGCATTTGGTAAGTATTATGCAAGAACAGAAGGAGGAGGAGGGTGAGCAACAAGTGTTTGATGGAAAATTAGATGAGGAAAAACAAAGTGGGAATGGGGTCTTGGTGCCAAGACAATTTATGGATCTTGGGTTGGCTAGTAATGTTGATACTAATGAACCTTCTCATTCTTCCTCAGTGGGAAGAAGTCAGGATCTGTCAAAGTCGCCAATAAACAATGAGGTAGCATCAAAAGAATTTGACACCAAGAAGAATGGGAGTGTTAGTGATGAAGGATTTGATCAAGAGAAGAAGGAATTTGGAAGGGGGATTGAAAGAGAAGACAGTCCCTCAGAAGGGGCTGCCGCTACTAGCAATGTTCCAAAGTTTAGTCCTCCAAGAAACGTTGATCAAGCTGAGGCTACCATGAGAAAGGCAAGGGTTTCTGTCAGAGCTCGATCAGAGGCACCCATGATCACTGATGGGTGTCAATGGAGAAAGTATGGGCAGAAGATGGCCAAAGGAAACCCATGTCCTCGAGCATATTATAGATGTACCATGGCAGCAGGTTGCCCAGTGAGAAAACAGGTGCAAAGGTGTGCTGATGACAGATCAATACTGATCACAACATATGAAGGGAATCACAATCACCCTTTGCCTCCAGCAGCTATTGCAATGGCACAAACAACTTCTGCAGCAGCTAGAATGCTGCTTTCAGGATCCATGTCAAGTGCTGATGGCCTAATGAATGGAAACTTCCTCACAAGGACACTCCTTCCTTGTTCTTCTAGCATGGCAACTATTTCAGCATCTGCACCATTCCCAACTGTTACATTGGATTTGACTCAGTCTCCAAACCCACTACAGTTCCCAAAGCCCCCAAACCAATTCCAAATCCCTTTCCCTGGTGTCCCTCAGAACTTTGCCAATTCCTCAGCCTCATTGCTGCCTCAGATATTTGGGCAGGCACTGTATAACCAGTCCAAGTTTTCTGGCCTCCAAATGTCACAGGATGCAGACCCTTCCCAGTTGAGTAACCAGTCTCAACGGCCACCACCACACCTTGCCGACACGGTGAGTGCTGCCACTGCTGCCATTGCAGCTGACCCCAACTTCACAGCAGCTTTGGCAGCAGCCATCACTTCTATCATTGGGGGTGCACAGCCAAACAACAACACCAGTACTAATAATAATGCCACCACATCCAGCAACACCAGCAATGCCAATGTTACCACATCAAACAACAACAAATAA 1866 0.4636 MARGGGLSIDSDPIGSFFPHNPVVLNSFPEDDNNTIINNNSSGQQKWKLGPNMDATVSRNRSPSSSPNNNNTSTSTIPFQVNLSSDNKRPHIDEMDFFPNKTDDDHKNGINNFASASTSAPPSLDHLLHTHDHSSTPAMLELKVNTGLNLLTTNTGSDHAMVDDQTSTNSEEKRAKSEMVVLQAELERMKVENHRLRNMLDQVNTNYNALQMHLVSIMQEQKEEEGEQQVFDGKLDEEKQSGNGVLVPRQFMDLGLASNVDTNEPSHSSSVGRSQDLSKSPINNEVASKEFDTKKNGSVSDEGFDQEKKEFGRGIEREDSPSEGAAATSNVPKFSPPRNVDQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCADDRSILITTYEGNHNHPLPPAAIAMAQTTSAAARMLLSGSMSSADGLMNGNFLTRTLLPCSSSMATISASAPFPTVTLDLTQSPNPLQFPKPPNQFQIPFPGVPQNFANSSASLLPQIFGQALYNQSKFSGLQMSQDADPSQLSNQSQRPPPHLADTVSAATAAIAADPNFTAALAAAITSIIGGAQPNNNTSTNNNATTSSNTSNANVTTSNNNK 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03098 621 MobiDBLite consensus disorder prediction 288 320 - -
Viun5g03098 621 Pfam WRKY DNA -binding domain 365 422 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g03098 621 MobiDBLite consensus disorder prediction 537 559 - -
Viun5g03098 621 FunFam probable WRKY transcription factor 31 348 425 - -
Viun5g03098 621 MobiDBLite consensus disorder prediction 258 341 - -
Viun5g03098 621 MobiDBLite consensus disorder prediction 258 287 - -
Viun5g03098 621 MobiDBLite consensus disorder prediction 589 621 - -
Viun5g03098 621 MobiDBLite consensus disorder prediction 38 86 - -
Viun5g03098 621 SMART WRKY_cls 363 423 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g03098 621 ProSiteProfiles WRKY domain profile. 358 424 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g03098 621 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 150 604 IPR044810 GO:0003700
Viun5g03098 621 Gene3D WRKY domain 348 425 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g03098 621 SUPERFAMILY WRKY DNA-binding domain 356 424 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g03098 621 MobiDBLite consensus disorder prediction 157 177 - -
Viun5g03098 621 MobiDBLite consensus disorder prediction 537 558 - -
Viun5g03098 621 Coils Coil 172 206 - -
Viun5g03098 621 MobiDBLite consensus disorder prediction 38 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03098 Viun-Chr5 42098657 42101741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03098 79 602 WRKY Transcription Factor Family AT1G62300 49.254 1.31e-136 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun5g03098 WRKY 1.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03098 - - gmx:100127384 837.025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03098 5 42098657 42101741 Viun6g02266 6 28234010 28236735 ECH
Viun5g03098 5 42098657 42101741 Viun5g03098 5 42098657 42101741 ECH
Viun5g03098 5 42098657 42101741 Viun11g01611 11 32522485 32524805 PCT