Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03096 ATGGAGTGGACTAGAGGCTTCATCATAGGACGTGGCTCATCAGCCACCGTCTACACCGCCACCTCCGCCCACTCCTCCACCGTTGCCGCCGTCAAGACTGCAGAGTTATCACCGTCAAACTCAGAAAAGTTGCAGAGGGAACAGAGGATTCTGTCGTCTCTGTTTTCTACCCACATAGTTACCTACAAAGGTTGTAACACTACAGAGGAAAACAACACCCTGTGGTTCAACCTCTTCATGGAGTACATGCCCTTCGGAACTCTCTCCCAGGAAATTCGCCGGCACGGTGGTCGGCTCGGCGAGCCGACCATCGTGAACTACGTTCGACAAGTCCTGCGGGGGCTAGAGTACTTGCACAATAAGGGTGTTGTGCATTGTGATATTAAAGGTAGCAACATTTTGATTGGTGAAGAGGGGGCCAAGATTGGGGATTTTGGTTGTGCTAAGTTGTGGAATGAGTCTCCGGTGGCGGCGATCGGCGGCACGCCAATGTTCATGGCCCCAGAGGTGGCGCGTGGGGAGGAGCAGGGGTACCCTGCTGATGTATGGGCGCTTGGGTGCACTGTGGTTGAAATGGCCACTGGGTTTGCGCCGTGGCCTAATTTAGAAGACCCTGTCACTGTGTTGTACCGCGTTGCATATTCCAATGAGGTTCCTGAGATTCCAAGTTTTCTGTCTGAAGAAGCAAAGGATTTCTTGGGGAAGTGTTTCAGGAGGAATCCTAAAGAGAGGTGGAGTTGTAGTCAGCTTCTGAAGCATCCGTTTGTTGGGGAATTCAGTTCCAACGACAAGGAAATTCAGCAATCTAATTCATGTTCTCCGACAAGTATTCTCGAGCAGAGCTTTTGGAATTCTGTGGAAGAGACAGAGACAGAGACAGAGACAGAGTCCGAGGAAGAGTGTGTCTCTGACCCTGGCAATGTGATTCGGATTAAAAGCTCTGATGAGTCTCCAAAGGGTAGGATCAGAAGGCTAGCTTTGTGTTCAGGGGATCCAATTTGGGAATTGGATGATGAAAATTGGATCACAACGAGGGGCAGTGAAGCAGGGGCTTCAAGCTGTGAGGGGTTGGATTTGGATGTTGATATTAGGATTAGTGATTATTTTTGTGATGATTATTATTATAAATGTAGTGATGTTAGTGTTGTAGTTGGTAGTTTCGATTTTGAGGGAGGCATTGATGAGATGGTTATCCCTTCAACATTTGAGTTTTTATGA 1218 0.4836 MEWTRGFIIGRGSSATVYTATSAHSSTVAAVKTAELSPSNSEKLQREQRILSSLFSTHIVTYKGCNTTEENNTLWFNLFMEYMPFGTLSQEIRRHGGRLGEPTIVNYVRQVLRGLEYLHNKGVVHCDIKGSNILIGEEGAKIGDFGCAKLWNESPVAAIGGTPMFMAPEVARGEEQGYPADVWALGCTVVEMATGFAPWPNLEDPVTVLYRVAYSNEVPEIPSFLSEEAKDFLGKCFRRNPKERWSCSQLLKHPFVGEFSSNDKEIQQSNSCSPTSILEQSFWNSVEETETETETESEEECVSDPGNVIRIKSSDESPKGRIRRLALCSGDPIWELDDENWITTRGSEAGASSCEGLDLDVDIRISDYFCDDYYYKCSDVSVVVGSFDFEGGIDEMVIPSTFEFL 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03096 405 SUPERFAMILY Protein kinase-like (PK-like) 4 292 IPR011009 -
Viun5g03096 405 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Viun5g03096 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Viun5g03096 405 ProSiteProfiles Protein kinase domain profile. 3 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03096 405 FunFam Mitogen-activated protein kinase kinase kinase 17 2 308 - -
Viun5g03096 405 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 298 - -
Viun5g03096 405 CDD STKc_MAPKKK 2 256 - -
Viun5g03096 405 Gene3D Transferase(Phosphotransferase) domain 1 2 317 - -
Viun5g03096 405 SMART serkin_6 3 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03096 405 Pfam Protein kinase domain 8 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03096 Viun-Chr5 42079152 42080718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03096 3 346 MAP Kinase Kinase Kinase AT5G55090 48.703 1.16e-107 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Viun5g03096 Pkinase 2.7e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03096 K20716 - gmx:100797801 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03096 5 42079152 42080718 Viun6g02268 6 28255759 28257230 ECH
Viun5g03096 5 42079152 42080718 Viun5g03096 5 42079152 42080718 ECH
Viun5g03096 5 42079152 42080718 Viun3g06112 3 64678768 64680174 ECH