Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03090 ATGGCGCGAACGGTCTCCAACAACGACAGCACCAACGATGAAACAGGCGACGACAGCAATGCGACAACGAAGGAGGACGGCGAGGTCAAAGGTCGCGTGAGGAAGGGGCCCTGGACCCCAGCAGAAGACGCCATTCTCGTAGAGTACGTGAAGAAGCACGGTGAAGGGAACTGGAACTCCGTGCACAAGAATTCTGGGTTGTTCAGGTGCGGCAAAAGTTGCAGACTTCGCTGGGCAAACCATCTCAGGCCTAATCTCAAGAAAGGTGCATTCTCTCCCGAGGAAGAACAGATCATCATCGACCTTCATTCCAAGCTTGGAAACAAATGGGCCCGAATGGCCGCACAGTTACCTGGCAGAACAGACAATGAAATAAAAAACTTTTGGAACACCAGAATGAAAAGGCGTCAGAGAGCAGGGTTACCTATTTATCCTCCCGAGGTGCATGCAGAAGCCACTGCATACCATCTACAACACCGCTACATGGAACACCACCAACCTCATTCATCTGCATCATTCGCTTTACTTCTATCTTCTTGTTACCCCAAGAAGCTCAATGACCCTAGCCAAAGTTCCAATGCGAATCCGCTGCAAAACCAACCTGATTCTGCCAACTGTTACATCAATCAAAGCCAGAAGCACTTCAAGTTTTCCAATGAAAATGCTTTGCCACTGTCTCCTCTTTCTCCATATGGATCATCATCATCCACCCTTCTTAACCACAGTTTCGGTGATCATGGCTTTATAGCAGGATCCCCATATGAATCCTTTCCTTTGGTGTCAGTCTCCACCCCTGACATCTCTTCCAACCAAACACCAACCCCTGCTTCATCCTATGCCAGTGGTGTTGATGGCTTGATGGGATCTTCAACCATGGCTAATAATAACAACAATGACTACTATGAAGTTGCACCATTGTCTCCTCCAGGAAACAGTGGACTGCTGGATGCTCTAGTGATGGAGGCTCAAGGACTTTCTCACAATGACAAGTCCAAGAATGAGGAGGATCCAACCCTTGCTGGAAAACTATCTTGTAAGAGAAAGAACATGGAATATGAAGAGGAGGCCATGATGTCAGCGATGAAGAAGAACAGTGGCAACAGTACTACTACTGAAAACCAGAGGGATGATGATAATAGCTCCTCTCAATTTTCAAAAGGGAAGAAAGTGATGAGAGAGGATCCGATGGAAGAGATGAACTCGATGGACGATGACTTGTTTAGTCTGCTGAATCAGTTTCCCTTAGAAATGCCAATGCCTGAGTGGTACCGTAGAGGGGAGAATCAGTCATTGGGACTTGAAAATCAGCCGAATGCTTCAGCACCTGACCCCGCTGATCAAGAGTATGCTTGGACTCTAGGAACTTGCTGGAACAACATGCCCAGCATATGCTAA 1395 0.4738 MARTVSNNDSTNDETGDDSNATTKEDGEVKGRVRKGPWTPAEDAILVEYVKKHGEGNWNSVHKNSGLFRCGKSCRLRWANHLRPNLKKGAFSPEEEQIIIDLHSKLGNKWARMAAQLPGRTDNEIKNFWNTRMKRRQRAGLPIYPPEVHAEATAYHLQHRYMEHHQPHSSASFALLLSSCYPKKLNDPSQSSNANPLQNQPDSANCYINQSQKHFKFSNENALPLSPLSPYGSSSSTLLNHSFGDHGFIAGSPYESFPLVSVSTPDISSNQTPTPASSYASGVDGLMGSSTMANNNNNDYYEVAPLSPPGNSGLLDALVMEAQGLSHNDKSKNEEDPTLAGKLSCKRKNMEYEEEAMMSAMKKNSGNSTTTENQRDDDNSSSQFSKGKKVMREDPMEEMNSMDDDLFSLLNQFPLEMPMPEWYRRGENQSLGLENQPNASAPDPADQEYAWTLGTCWNNMPSIC 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03090 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
Viun5g03090 464 MobiDBLite consensus disorder prediction 1 17 - -
Viun5g03090 464 MobiDBLite consensus disorder prediction 361 378 - -
Viun5g03090 464 MobiDBLite consensus disorder prediction 359 392 - -
Viun5g03090 464 SMART sant 87 135 IPR001005 -
Viun5g03090 464 SMART sant 34 84 IPR001005 -
Viun5g03090 464 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 13 431 - -
Viun5g03090 464 MobiDBLite consensus disorder prediction 327 345 - -
Viun5g03090 464 ProSiteProfiles Myb-like domain profile. 30 82 IPR001005 -
Viun5g03090 464 Pfam Myb-like DNA-binding domain 38 97 - -
Viun5g03090 464 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Viun5g03090 464 MobiDBLite consensus disorder prediction 1 36 - -
Viun5g03090 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 82 IPR017930 -
Viun5g03090 464 MobiDBLite consensus disorder prediction 18 36 - -
Viun5g03090 464 SUPERFAMILY Homeodomain-like 32 129 IPR009057 -
Viun5g03090 464 MobiDBLite consensus disorder prediction 326 345 - -
Viun5g03090 464 Gene3D - 35 87 - -
Viun5g03090 464 CDD SANT 37 82 IPR001005 -
Viun5g03090 464 FunFam MYB-related transcription factor 34 87 - -
Viun5g03090 464 FunFam Transcription factor MYB97 90 169 - -
Viun5g03090 464 Gene3D - 90 136 - -
Viun5g03090 464 CDD SANT 90 131 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03090 Viun-Chr5 42018014 42020911 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03090 31 464 MYB Transcription Factor Family AT2G32460 39.842 6.99e-81 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun5g03090 Myb_DNA-bind_6 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03090 K09422 - gmx:100798860 719.153