Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03083 ATGAAGAAATTCATGGTTTTGCACCTTGTGACATGGATTTGGATATGTGGTGTTGCTCACAGCACAACGCCTGCCAGTGTGAACATTGGCGCGGTTTTTGCTTTCGATTCGGTCATAGGTAGAGTTGCGAAGGAAGCTATGGAAATGGCCATTTCTGATGTCAATAAGAATCCCACAGTTCTTAACGGAACCGAACTCAAGTTGATAATGAAGGATGCCATGTGCAATGCTTTTCTGGGATCAATTGGAGCTTTTCAGTTACTTGAGATAGGAGTTGCAGCCATAATTGGTCCCCAGTCATCCGCTGTAGCTCACACGGTTTCTCAAATTGCTGATGCTCTCCAAGTTCCTCTTGTTTCATATGCTGCCACCGATCCAACCTTGTCCTCACTCCAGTTTCCTTTCTTTATTCGATCTACGCAAAGTGACTTGGCACAAATGACTGCAATGGCTGATCTAATTGACTTTAATGGATGGAAAGAGGTCATTGTTGTATTCTTAGATGATGATTATGGAAGAAATGGAGTATCTGCTTTGAATGATGAACTTGAAAAAAGGAGATTGAAAATTTCTTATAAACTGCCTTTGAGTATTAAGTTTGATCCGGTTGAAATCACCAACTTACTCAATCAATCTAAATTGATTGGTCCTCGTGTGTATGTTGTTCATGTCAACCCTGATCCAAGCTTGAGAATTTTTTCTATTGCCCATAAACTTCAAATGATGTCCAAGGATTACGTCTGGCTTGTCACGGATTGGCTCTCAGCTACACTAGATTCATTATCCCTAGTGAATCAAACCTCTTTCAGTGTTCTCCAAGGGGTTGTTGGTCTTCGGCAACACATTTTGGATTCCCAAAAAAAGAGAGATTTCATTTCTCGGTGGATGAAAAGGCAAAAAGATGGATTGACAAATACTAGTTTGAACTCCTATGGATTTTCTGCTTATGACACGGTTTGGGCAATTGCACTTTCAATTGATAAATTCATCAAAGTAAATAATTTAACCTTCATGCCTCATGATAACTATAAGCTATCTCAAACAGAAGGAATTGGCGTTCAGCTTGACAAACTCAAAATCTTCACTGGTGGATCTGATCTGGTCAAGATATTATTACAGTCAAATTTTACTGGTGTGAGTGGTCAAGTTCTGTTTAATTCTGACAGAAATATTGTGAGTCGTGGTTATGATATTATCAATATCAATCAGTTGGGAATTACTAGGGTTGGGTTTTGGTCTAATTATTCTGGATTTTCAGTTGTACCACCTGAAACTCTTAAAAAAAGGGCACACAGCAGGTTTTCCAAAGATCAGAAGCTTGACAACATTACTTGGCCTGGTGGAAAGACAGATCGACCACGTGGCTGGGTGATTGCTGATAATACCAAGCCACTGAGAATTGGAGTGCCGAAAAGAGCAAGTTTTGTTGAATTTGTAACTGAAGTGCCAAATAGTCATGATATTCAGGGGTATTGCATCGATGTGTTCATGAAAGCCCTAGAATTTATTCCATATGAAGTTCCCTTTGTATTCAAGCCTTTCGGCAATGGTAAAGCAAATCCCAATTACGATGAACTTGTGAAAATGGTTGCTGATAATGTATATGATGCTGTTGTTGGAGACATTGCAATTGTGACAAACCGTACTAGGATTGTGGATTTTTCTCAGCCTTTTGCATCATCTAGCCTTGTCATAGTGGCTCCTATCAACAAAGCAGGATCAAGTGCTTGGGTGTTCCTCAAACCATTTACAGCAGATATGTGGTGTGCTACTGCTGCCTCATTTTTGGTGGTTGGAATTGTTATATGGATTCTTGAGCACCGAGTCAATAATGACTTTCGTGGTCCTCCTAAGAAGCAAATTATAACAATGATAATGTTCAGCCTCTCAACCCTGTTTAAGAAAAATCAGGAAGATACCGTAAGCTCTCTTTCTAAAATGGTGATGATAGTGTGGCTTTTTCTATTGATGGTGATCACGGCTAGCTATACAGCAAGCTTGACTTCAATTCTTACGGTTGAGCAGCTTTCATCGCCCATCACAGGAATTGAGAGCTTGATTGCAAGTAGCTGGCCTATAGGGTACCAAGTGGGGTCATTTGCTTACAGCTATATGGCAGATAATCTTTATATTTCAAAATCAAGGCTTGTTCCACTAGGCTCCCCTGAGGAATATGCTTTAGCACTGCAGAAGGGACCTTCTGCTGGAGGTGTTGCAGCTATTGTAGATGAGCTTCCGTATGTTGAGTTATTTCTGTCAAAAGAAACTGATTTTGGTATCATTGGACAGCCATTCGCAAGAAACAGTTGGGGATTTGCTTTTCAAAGAGAATCTCCTTTTGCCTTTGACATGTCTACAGCAATTTTGAAACTTTCTGAGAATGGGGATCTTCATAGGATACATGAGAGGTGGTTCTGTAAAATGGGTTGTCCTGAAGAAAGGACAAGCAACTCCAAGCCTGAGCAGCTTCACTTGGTTAGCTTTTGGGGCCTCTATCTCTCATGTGGTGTTGTCTCTCTTGCTGCACTTGTTGTGTTTCTGCTGCGAATGATTCGGCAATACGCTCGCTTCAAGAAAAAGCAAAAGGATATTGCTTCTTCGTCCTCAGAACAACAACCATCAGGCAGCCATTGCTCCCAGGTTGTTATTAACTTCTTTAACTTCATTGATGAGAAGGAAGAGGCCATCAAGAAAATGTTCACTCCATCTGACAATCATCACAACCCCAACTGA 2733 0.4065 MKKFMVLHLVTWIWICGVAHSTTPASVNIGAVFAFDSVIGRVAKEAMEMAISDVNKNPTVLNGTELKLIMKDAMCNAFLGSIGAFQLLEIGVAAIIGPQSSAVAHTVSQIADALQVPLVSYAATDPTLSSLQFPFFIRSTQSDLAQMTAMADLIDFNGWKEVIVVFLDDDYGRNGVSALNDELEKRRLKISYKLPLSIKFDPVEITNLLNQSKLIGPRVYVVHVNPDPSLRIFSIAHKLQMMSKDYVWLVTDWLSATLDSLSLVNQTSFSVLQGVVGLRQHILDSQKKRDFISRWMKRQKDGLTNTSLNSYGFSAYDTVWAIALSIDKFIKVNNLTFMPHDNYKLSQTEGIGVQLDKLKIFTGGSDLVKILLQSNFTGVSGQVLFNSDRNIVSRGYDIININQLGITRVGFWSNYSGFSVVPPETLKKRAHSRFSKDQKLDNITWPGGKTDRPRGWVIADNTKPLRIGVPKRASFVEFVTEVPNSHDIQGYCIDVFMKALEFIPYEVPFVFKPFGNGKANPNYDELVKMVADNVYDAVVGDIAIVTNRTRIVDFSQPFASSSLVIVAPINKAGSSAWVFLKPFTADMWCATAASFLVVGIVIWILEHRVNNDFRGPPKKQIITMIMFSLSTLFKKNQEDTVSSLSKMVMIVWLFLLMVITASYTASLTSILTVEQLSSPITGIESLIASSWPIGYQVGSFAYSYMADNLYISKSRLVPLGSPEEYALALQKGPSAGGVAAIVDELPYVELFLSKETDFGIIGQPFARNSWGFAFQRESPFAFDMSTAILKLSENGDLHRIHERWFCKMGCPEERTSNSKPEQLHLVSFWGLYLSCGVVSLAALVVFLLRMIRQYARFKKKQKDIASSSSEQQPSGSHCSQVVINFFNFIDEKEEAIKKMFTPSDNHHNPN 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03083 910 SMART GluR_14 466 807 IPR001320 GO:0015276|GO:0016020
Viun5g03083 910 Gene3D - 45 393 - -
Viun5g03083 910 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 27 866 IPR015683 -
Viun5g03083 910 Pfam Receptor family ligand binding region 44 402 IPR001828 -
Viun5g03083 910 Gene3D - 771 805 - -
Viun5g03083 910 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 40 56 - -
Viun5g03083 910 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 231 254 - -
Viun5g03083 910 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 100 128 - -
Viun5g03083 910 FunFam Glutamate receptor 142 300 - -
Viun5g03083 910 SUPERFAMILY Periplasmic binding protein-like II 444 805 - -
Viun5g03083 910 Gene3D - 462 575 - -
Viun5g03083 910 Gene3D - 736 770 - -
Viun5g03083 910 SUPERFAMILY Periplasmic binding protein-like I 23 456 IPR028082 -
Viun5g03083 910 CDD GluR_Plant 463 805 - -
Viun5g03083 910 Pfam Ligand-gated ion channel 806 837 IPR001320 GO:0015276|GO:0016020
Viun5g03083 910 PIRSF IGluLR_plant 1 910 IPR017103 -
Viun5g03083 910 Pfam Bacterial extracellular solute-binding proteins, family 3 479 805 IPR001638 -
Viun5g03083 910 FunFam Glutamate receptor 460 576 - -
Viun5g03083 910 Gene3D - 142 418 - -
Viun5g03083 910 FunFam Glutamate receptor 576 714 - -
Viun5g03083 910 CDD PBP1_GABAb_receptor_plant 28 422 IPR044440 -
Viun5g03083 910 FunFam Glutamate receptor 702 809 - -
Viun5g03083 910 Gene3D - 576 704 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03083 Viun-Chr5 41905806 41911137 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03083 24 908 Ion Channels AT2G32400 56.693 0.0 1031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03083 K05387 - gmx:100796389 1563.13