Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03081 ATGGAGGTGATGTGGGTCACAAGCCACGGAAGAATTTTTGTGGGAAGGGTGTTGTTTCTCTTGGTTTTGTTCTTGTGGATTCCGACGCAGGTAGTGGTGGGAAGGACAAGAACTACTGTCACAAACTCTTCTACTTCTTCTTCGACACCAAGAGTTTTGAGAGTTGGAGCACTGTTCAGTCTCGATTCTGTAATTGGAAGATCGGCTGAACCTGCACTTGTGGCTGCTTTCGAAGATGTTAATGCTGATTCAAGCATTCTCCCTGGCATTAAACTCGAAGCTGCTTTGCATGATACAAATTGCAGTGGCTTTGCTGGAACAATGGAAGCATTGCAGTTGATGGAGGATGAAGTGATTGCTGCAATTGGTCCACAGTCCTCAGGAATAGCCCATGTCATCTCTCATGTGGTCAATGAACTCCATGTCCCTCTTATTTCATTTGGGGCAACAGACCCTTCTCTATCTTCCCTTCAGTACCCATATTTTGTTCGCAGCACCCAAAGTGACTATTATCAGATGTATGCAATTGCAGCTTTGGTTGATTACTACAGATGGAGGGAGATAATAGCCATTTATGTAGATGATGATAATGGAAGAAATGGAATTTCAGTACTTGGAGATGCTCTGTCAAAAAAACGTGCCAAGATCTCTTACAAGGCTCCATTCCCTCCTGGGGCACCCAGAAAAGACATCAGTGACTTGTTAAATGGAGTTAACCTAATGGAGTCAAGGGTCTTCGTTTTGCATGTTAATCCTGAAACTGGTTTGAGCATTTTTTCCATTGCTCAGAAGCTAGGAATGATGGGCAGTGGCTATGTATGGATTGCAACAGATTCACTTGCTTCAGCTCTTGATTCATCAGAGCCAGTTGATCCTAAGATATTGAATCTCCTACAAGGGGTTTTGGCTTTACGTCATCACACTCCTGATACTAATGAAAAGAAGAATTTTCTCTCCAGAATGAAGAGACTAAGAAACAAGGAGACTCCAAGCTTCAATTCCTATGCACTGTATGCATATGATACAGTTTGGCTAGTAGCCCATGCTCTTGATGCTTTTTTGAAAGAAGGTGGTGTGGTATCTTTCTCCTCTGACCCTAAGTTAAGCGACACAAATGGAAGCACACTGCATTTAGAATCACTTCATGTTTTTGATGAAGGCCCTACTTTTCTGCAGACAATTTTGGGAACCAACTTCACTGGTCTGACAGGACTAGTTCAGTTTGATAATGAAAGGAATAGAATTCGTCCAGCATATGATATCTTGAACATTGGTGGGTCTGGAATGCGCAGAATTGGTTATTGGTCTAATTACTCAGGTCTCTCAGTTGTGGCACCAGAAATTCTGTATAAGAAGCCACCAAACACTTCAACAAGCAGCCAGCAACTATATGGTGTTATTTGGCCTGGAGAAACTGCAGCTAAACCAAGGGGATGGGTGTTTCCCAACAATGGAAAGCCACTGAGAATTGCAGTGCCTAACCGAGTAAGCTACTTGGAGTTTGTTTCTAAAGACAAGAACCCCCCTGGTGTAAGAGGCTATTGCATTGATGTATTTGAAGCTGCCATAAACTTGTTGCCTTATCCTGTCCCGCGAGAATACATATTATTTGGACCTGGTGATAGAAATCCTAGCTACGATGACATTTCTAGTCAAGTTGCACTAAATAACTATGATGCAGCTGTTGGTGATGTTACAATTGTTCCCAACAGGACAAGGTTTTTGGATTTTACACAACCTTACATAGAATCAGGTCTGGTTGTTGTTGTTCCTGTCAAGGAGATCAAATCAAGTCCTTGGTCTTTCCTCAAGCCCTTCACTGCTCAAATGTGGTGTGTTACTGGTGCTTTTTTTATCCTTGTGGGAACCGTTGTATGGATTCTTGAGCACAGGCACAATCCGGAGTTCCGTGGTAGACCAAAGAAACAACTCATGACAGTCTTCTGGTTTAGTTTCTCAACAATGTTTTTCTCACACAGAGAGAACACAGTGAGTGGTCTTGGGAGATTGGTCCTAATCATATGGCTTTTTGTGGTGCTAATTATCAATTCAAGCTACACAGCTAGCTTAACATCCATCCTCACAGTGCAGCAACTTTCATCACAGATTGAAGGAATTGACAGCTTGATTTCAAGCAATCAACCCATTGGAATTCAAGAAGGCTCATTTGCACGCAAGTATTTGACAGAAGAACTCAACATACAACCATCAAGGATAGTTACATTGAAAAATATGGAGGCATATATTGATGCTCTTGAGCGTGGACCAAAAGATGGAGGAGTTGTGGCTGTTGTTGATGAGCTTCCTTACATTGAAATCTTAATGTCAAATACAAACTGCAAGTTCAGAACCGTTGGGCAGGAGTTCACTAAAAGTGGTTGGGGATTTGCATTCCAGAGGGACTCTCCCCTTGCTGTTGACATGTCAACTGCAATTCTTCAACTCTCAGAGAATGGTGACCTGCAAAAAATCCATGACAAATGGCTCTTGAAACAGGATTGTTCTACGCAAGAAAATGATGTTGATTTAAACAAACTATCTCTGAGTAGCTTCTGGGGTCTGTTTCTTATATGTGGCATTGCATGTCTCCTTGCTTTGACTGCATTCTTCATTAGAGTGCTATGTCAGTACACAAAATTCAGCCCAGAATCTGAGCAACATGATGAGGAAACTTCACCAGACAGGCCTAAAGGTAAAGGGCCTTTTGGAAGCAATACTAGCTTCAGAGACTTGATTTATTTTGTGGATAAGAAAGAAAAAGAAATCAAAGAGATACTTAAGCAGAAGAGTAAGAAAAGAAGACGCAGTCTGAGCTTAGATGGCCAATCTTCTTCATCCGCCTAA 2844 0.4191 MEVMWVTSHGRIFVGRVLFLLVLFLWIPTQVVVGRTRTTVTNSSTSSSTPRVLRVGALFSLDSVIGRSAEPALVAAFEDVNADSSILPGIKLEAALHDTNCSGFAGTMEALQLMEDEVIAAIGPQSSGIAHVISHVVNELHVPLISFGATDPSLSSLQYPYFVRSTQSDYYQMYAIAALVDYYRWREIIAIYVDDDNGRNGISVLGDALSKKRAKISYKAPFPPGAPRKDISDLLNGVNLMESRVFVLHVNPETGLSIFSIAQKLGMMGSGYVWIATDSLASALDSSEPVDPKILNLLQGVLALRHHTPDTNEKKNFLSRMKRLRNKETPSFNSYALYAYDTVWLVAHALDAFLKEGGVVSFSSDPKLSDTNGSTLHLESLHVFDEGPTFLQTILGTNFTGLTGLVQFDNERNRIRPAYDILNIGGSGMRRIGYWSNYSGLSVVAPEILYKKPPNTSTSSQQLYGVIWPGETAAKPRGWVFPNNGKPLRIAVPNRVSYLEFVSKDKNPPGVRGYCIDVFEAAINLLPYPVPREYILFGPGDRNPSYDDISSQVALNNYDAAVGDVTIVPNRTRFLDFTQPYIESGLVVVVPVKEIKSSPWSFLKPFTAQMWCVTGAFFILVGTVVWILEHRHNPEFRGRPKKQLMTVFWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISSNQPIGIQEGSFARKYLTEELNIQPSRIVTLKNMEAYIDALERGPKDGGVVAVVDELPYIEILMSNTNCKFRTVGQEFTKSGWGFAFQRDSPLAVDMSTAILQLSENGDLQKIHDKWLLKQDCSTQENDVDLNKLSLSSFWGLFLICGIACLLALTAFFIRVLCQYTKFSPESEQHDEETSPDRPKGKGPFGSNTSFRDLIYFVDKKEKEIKEILKQKSKKRRRSLSLDGQSSSSA 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03081 947 CDD PBP1_GABAb_receptor_plant 54 445 IPR044440 -
Viun5g03081 947 Pfam Ligand-gated ion channel 831 862 IPR001320 GO:0015276|GO:0016020
Viun5g03081 947 FunFam Glutamate receptor 168 326 - -
Viun5g03081 947 Pfam Bacterial extracellular solute-binding proteins, family 3 545 830 IPR001638 -
Viun5g03081 947 SUPERFAMILY Periplasmic binding protein-like I 48 480 IPR028082 -
Viun5g03081 947 Gene3D - 168 441 - -
Viun5g03081 947 Pfam Receptor family ligand binding region 70 425 IPR001828 -
Viun5g03081 947 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 60 890 IPR015683 -
Viun5g03081 947 FunFam Glutamate receptor 599 729 - -
Viun5g03081 947 Coils Coil 915 935 - -
Viun5g03081 947 MobiDBLite consensus disorder prediction 884 907 - -
Viun5g03081 947 Gene3D - 72 416 - -
Viun5g03081 947 Gene3D - 483 598 - -
Viun5g03081 947 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 339 351 - -
Viun5g03081 947 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 66 82 - -
Viun5g03081 947 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 126 154 - -
Viun5g03081 947 CDD GluR_Plant 486 829 - -
Viun5g03081 947 Gene3D - 599 719 - -
Viun5g03081 947 SMART GluR_14 489 831 IPR001320 GO:0015276|GO:0016020
Viun5g03081 947 FunFam Glutamate receptor 725 833 - -
Viun5g03081 947 Gene3D - 720 833 - -
Viun5g03081 947 PIRSF IGluLR_plant 13 947 IPR017103 -
Viun5g03081 947 FunFam Glutamate receptor 483 599 - -
Viun5g03081 947 SUPERFAMILY Periplasmic binding protein-like II 464 830 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03081 Viun-Chr5 41897927 41902959 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03081 16 796 Ion Channels AT1G05200 66.624 0.0 1103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03081 K05387 - gmx:100799912 1625.53