Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03079 ATGCTTTCGATCATATATAACAACTCCTCAAAACTGTTGCAACATGGGAAGCTTTTACACATTAAGTTTGGTGTTGAGATGGAGGTGATGTGGGTCACAAGCCACGGAAGAATTTTTGTGGGAAGGGTGTTGTTTCTCTTGGTTTTGTTCTTGTGGATTCCGACGCAGGTAGTGGTGGGAAGGACAAGAACTACTGTCACAAACTCTTCTACTTCTTCTTCGACACCAAGAGTTTTGAGAGTTGGAGCACTGTTCAGTCTCGATTCTGTAATTGGAAGATCGGCTGAACCTGCACTTGTGGCTGCTTTCGAAGATGTTAATGCTGATTCAAGCATTCTCCCTGGCATTAAACTCGAAGCTGCTTTGCATGATACAAATTGCAGTGGCTTTGCTGGAACAATGGAAGCATTGCAGTTGATGGAGGATGAAGTGATTGCTGCAATTGGTCCACAGTCCTCAGGAATAGCCCATGTCATCTCTCATGTGGTCAATGAACTCCATGTCCCTCTTATTTCATTTGGGGCAACAGACCCTTCTCTATCTTCCCTTCAGTACCCATATTTTGTTCGCAGCACCCAAAGTGACTATTATCAGATGTATGCAATTGCAGCTTTGGTTGATTACTACAGATGGAGGGAGATAATAGCCATTTATGTAGATGATGATAATGGAAGAAATGGAATTTCAGTACTTGGAGATGCTCTGTCAAAAAAACGTGCCAAGATCTCTTACAAGGCTCCATTCCCTCCTGGGGCACCCAGAAAAGACATCAGTGACTTGTTAAATGGAGTTAACCTAATGGAGTCAAGGGTCTTCGTTTTGCATGTTAATCCTGAAACTGGTTTGAGCATTTTTTCCATTGCTCAGAAGCTAGGAATGATGGGCAGTGGCTATGTATGGATTGCAACAGATTCACTTGCTTCAGCTCTTGATTCATCAGAGCCAGTTGATCCTAAGATATTGAATCTCCTACAAGGGGTTTTGGCTTTACGTCATCACACTCCTGATACTAATGAAAAGAAGAATTTTCTCTCCAGAATGAAGAGACTAAGAAACAAGGAGACTCCAAGCTTCAATTCCTATGCACTGTATGCATATGATACAGTTTGGCTAGTAGCCCATGCTCTTGATGCTTTTTTGAAAGAAGGTGGTGTGGTATCTTTCTCCTCTGACCCTAAGTTAAGCGACACAAATGGAAGCACACTGCATTTAGAATCACTTCATGTTTTTGATGAAGGCCCTACTTTTCTGCAGACAATTTTGGGAACCAACTTCACTGGTCTGACAGGACTAGTTCAGTTTGATAATGAAAGGAATAGAATTCGTCCAGCATATGATATCTTGAACATTGGTGGGTCTGGAATGCGCAGAATTGGTTATTGGTCTAATTACTCAGGTCTCTCAGTTGTGGCACCAGAAATTCTGTATAAGAAGCCACCAAACACTTCAACAAGCAGCCAGCAACTATATGGTGTTATTTGGCCTGGAGAAACTGCAGCTAAACCAAGGGGATGGGTGTTTCCCAACAATGGAAAGCCACTGAGAATTGCAGTGCCTAACCGAGTAAGCTACTTGGAGTTTGTTTCTAAAGACAAGAACCCCCCTGGTGTAAGAGGCTATTGCATTGATGTATTTGAAGCTGCCATAAACTTGTTGCCTTATCCTGTCCCGCGAGAATACATATTATTTGGACCTGGTGATAGAAATCCTAGCTACGATGACATTTCTAGTCAAGTTGCACTAAATAACTATGATGCAGCTGTTGGTGATGTTACAATTGTTCCCAACAGGACAAGGTTTTTGGATTTTACACAACCTTACATAGAATCAGGTCTGGTTGTTGTTGTTCCTGTCAAGGAGATCAAATCAAGTCCTTGGTCTTTCCTCAAGCCCTTCACTGCTCAAATGTGGTGTGTTACTGGTGCTTTTTTTATCCTTGTGGGAACCGTTGTATGGATTCTTGAGCACAGGCACAATCCGGAGTTCCGTGGTAGACCAAAGAAACAACTCATGACAGTCTTCTGGTTTAGTTTCTCAACAATGTTTTTCTCACACAGAGAGAACACAGTGAGTGGTCTTGGGAGATTGGTCCTAATCATATGGCTTTTTGTGGTGCTAATTATCAATTCAAGCTACACAGCTAGCTTAACATCCATCCTCACAGTGCAGCAACTTTCATCACAGATTGAAGGAATTGACAGCTTGATTTCAAGCAATCAACCCATTGGAATTCAAGAAGGCTCATTTGCACGCAAGTATTTGACAGAAGAACTCAACATACAACCATCAAGGATAGTTACATTGAAAAATATGGAGGCATATATTGATGCTCTTGAGCGTGGACCAAAAGATGGAGGAGTTGTGGCTGTTGTTGATGAGCTTCCTTACATTGAAATCTTAATGTCAAATACAAACTGCAAGTTCAGAACCGTTGGGCAGGAGTTCACTAAAAGTGGTTGGGGATTTGCATTCCAGAGGGACTCTCCCCTTGCTGTTGACATGTCAACTGCAATTCTTCAACTCTCAGAGAATGGTGACCTGCAAAAAATCCATGACAAATGGCTCTTGAAACAGGATTGTTCTACGCAAGAAAATGATGTTGATTTAAACAAACTATCTCTGAGTAGCTTCTGGGGTCTGTTTCTTATATGTGGCATTGCATGTCTCCTTGCTTTGACTGCATTCTTCATTAGAGTGCTATGTCAGTACACAAAATTCAGCCCAGAATCTGAGCAACATGATGAGGAAACTTCACCAGACAGGCCTAAAGGTAAAGGGCCTTTTGGAAGCAATACTAGCTTCAGAGACTTGATTTATTTTGTGGATAAGAAAGAAAAAGAAATCAAAGAGATACTTAAGCAGAAGAGTAAGAAAAGAAGACGCAGTCTGAGCTTAGATGGCCAATCTTCTTCATCCGCCTAA 2922 0.4175 MLSIIYNNSSKLLQHGKLLHIKFGVEMEVMWVTSHGRIFVGRVLFLLVLFLWIPTQVVVGRTRTTVTNSSTSSSTPRVLRVGALFSLDSVIGRSAEPALVAAFEDVNADSSILPGIKLEAALHDTNCSGFAGTMEALQLMEDEVIAAIGPQSSGIAHVISHVVNELHVPLISFGATDPSLSSLQYPYFVRSTQSDYYQMYAIAALVDYYRWREIIAIYVDDDNGRNGISVLGDALSKKRAKISYKAPFPPGAPRKDISDLLNGVNLMESRVFVLHVNPETGLSIFSIAQKLGMMGSGYVWIATDSLASALDSSEPVDPKILNLLQGVLALRHHTPDTNEKKNFLSRMKRLRNKETPSFNSYALYAYDTVWLVAHALDAFLKEGGVVSFSSDPKLSDTNGSTLHLESLHVFDEGPTFLQTILGTNFTGLTGLVQFDNERNRIRPAYDILNIGGSGMRRIGYWSNYSGLSVVAPEILYKKPPNTSTSSQQLYGVIWPGETAAKPRGWVFPNNGKPLRIAVPNRVSYLEFVSKDKNPPGVRGYCIDVFEAAINLLPYPVPREYILFGPGDRNPSYDDISSQVALNNYDAAVGDVTIVPNRTRFLDFTQPYIESGLVVVVPVKEIKSSPWSFLKPFTAQMWCVTGAFFILVGTVVWILEHRHNPEFRGRPKKQLMTVFWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISSNQPIGIQEGSFARKYLTEELNIQPSRIVTLKNMEAYIDALERGPKDGGVVAVVDELPYIEILMSNTNCKFRTVGQEFTKSGWGFAFQRDSPLAVDMSTAILQLSENGDLQKIHDKWLLKQDCSTQENDVDLNKLSLSSFWGLFLICGIACLLALTAFFIRVLCQYTKFSPESEQHDEETSPDRPKGKGPFGSNTSFRDLIYFVDKKEKEIKEILKQKSKKRRRSLSLDGQSSSSA 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03079 973 Gene3D - 625 745 - -
Viun5g03079 973 Pfam Ligand-gated ion channel 857 888 IPR001320 GO:0015276|GO:0016020
Viun5g03079 973 FunFam Glutamate receptor 751 859 - -
Viun5g03079 973 Gene3D - 746 859 - -
Viun5g03079 973 CDD GluR_Plant 512 855 - -
Viun5g03079 973 SMART GluR_14 515 857 IPR001320 GO:0015276|GO:0016020
Viun5g03079 973 Pfam Receptor family ligand binding region 96 451 IPR001828 -
Viun5g03079 973 SUPERFAMILY Periplasmic binding protein-like II 490 856 - -
Viun5g03079 973 FunFam Glutamate receptor 194 352 - -
Viun5g03079 973 Pfam Bacterial extracellular solute-binding proteins, family 3 571 856 IPR001638 -
Viun5g03079 973 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 152 180 - -
Viun5g03079 973 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 92 108 - -
Viun5g03079 973 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 365 377 - -
Viun5g03079 973 PIRSF IGluLR_plant 39 973 IPR017103 -
Viun5g03079 973 Gene3D - 98 442 - -
Viun5g03079 973 CDD PBP1_GABAb_receptor_plant 80 471 IPR044440 -
Viun5g03079 973 Gene3D - 194 467 - -
Viun5g03079 973 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 86 916 IPR015683 -
Viun5g03079 973 Gene3D - 509 624 - -
Viun5g03079 973 FunFam Glutamate receptor 625 755 - -
Viun5g03079 973 SUPERFAMILY Periplasmic binding protein-like I 74 506 IPR028082 -
Viun5g03079 973 Coils Coil 941 961 - -
Viun5g03079 973 MobiDBLite consensus disorder prediction 910 933 - -
Viun5g03079 973 FunFam Glutamate receptor 509 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03079 Viun-Chr5 41897927 41903034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03079 42 822 Ion Channels AT1G05200 66.624 0.0 1105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03079 K05387 - gmx:100799912 1625.53