Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03077 ATGCCAGCTGGTATTATGATTCCAGCAAGAAACATGCCCTCGATGATCGGAAGAAACGGCAACGTTGGTGGCTTTGGACTATCTTCGGGGCTCTCTCTTGGCCAGATTGAAAACCATAAGGCTCCGGAATCTCAAAGATCTGTAGAAATGTTCCAGCCAAACCTGATGGAAGCTGGTCAACTTCTTCCTTTGGACATGCCTCAGAACACTTCAGAGAGCGATGTCCCAAGAATTCGCGAAGATGACTTTGACAGTGCCACCAAGTCAGGAAGTGAAAACCAAGAAGGTGCTTCCGGTGAAGATCAAGACCCTCGTCCCAACAAGAAGAAACGCTACCACCGCCACACTCAGCACCAGATCCAGGAAATGGAAGCTTTCTTTAAGGAGTGCCCGCACCCTGATGACAAGCAAAGGAAGGAGCTGAGTCGAGAGTTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTTTCAGAACAAGCGCACTCAGATAAAGACACAACATGAGCGCCATGAGAACACACAGCTCCGAACTGAAAATGATAAGCTTCGAGCTGATAATATGAGGTTCAGGGAAGCTCTCAGCAATGCCTCGTGCCCTAACTGTGGAGGACCAACAGCTATAGGGGAAATGTCATTCGACGAACATCACTTGAGGCTTGAAAATGCTCGCCTCAGAGAAGAGATTGATAGGATTTCTGCCATTGCTGCGAAGTATGTGGGGAAGCCTGTGGTGAGTTATCCACTTCTTTCTCCTTCTGTTCCTCCGCGACCACTTGAGCTTGGGATCGGAGGTGGTTTTGGTGGCCAGCCTGCGGGCATTGGTGGAGACATGTATGGTGGAGCTGCAGGAGATCTTCTTAGGTCAATCAGTGGACCTACTGAGGCTGATAAACCCATCATAATAGAGCTTGCTGTTGCAGCCATGGAGGAACTCATTGGAATGGCGCAAATGGGTGATCCTCTTTGGTTGACTACTCTGGATGGCACTACCACTGTTCTCAATGAGGATGAATACATCAGGTCTTTTCCTAGAGGGATTGGTCCTAAACCCGCTGGTTTCAAGTGTGAAGCTTCACGAGAAACTGCAGTTGTTATCATGAACCATGTTAGCCTCGTCGAGATTCTCATGGACGTGAATCAATGGTCCACAGTTTTCTCTGGCATTGTCTCAAGAGCAATGACTTTGGAGGTGTTATCAACTGGGGTGGCGGGAAACTACAATGGTGCATTGCAAGTGATGACAGCAGAATTACAAGTACCTTCACCTCTGGTGCCAACTCGAGAGAGCTATTTTGTAAGATATTGTAAGCAGCATGGTGATGGGACTTGGGCTGTAGTGGACGTATCTTTGGATAATTTGCGTCCTAGTCCCTCGGCCAGATGTAGAAGAAGGCCTTCAGGTTGCTTAATTCAAGAAATGCCCAATGGCTACTCAAAGGTCATATGGGTTGAGCATGTTGAGGTGGATGATAGAGGTGTTCACAATCTATACAAGCAGCTTGTTAGTTCTGGACATGCATTCGGTGCAAAACGTTGGATTGCTACCTTGGATCGACAATGTGAGAGGCTTGCTTGTGCCATGGCAACAAACATTCCCACAGTAGATGTTGGAGTGATAACAAACCAAGATGGGAGGAAGAGTATGCTGAAACTGGCTGAGAGAATGGTTATAAGTTTCTGCGCTGGAGTGAGTGCATCTACTGCACACACATGGACAACACTCTCAGGAACTGGAGCTGATGATGTAAGGGTGATGACACGTAAGAGTGTTGATGACCCAGGAAGACCTCCTGGCATTGTTCTCAGTGCTGCAACTTCTTTTTGGCTCCCGGTGTCACCAAAAAGGGTGTTTGAATTCCTCCGTGATGAGAACTCCAGAAGTGAGTGGGATATTCTTTCAAATGGAGGAGTTGTCCAAGAAATGGCACACATTGCCAATGGACGAGACACTGGAAACTGTGTCTCTCTACTTCGCGTGAATAGTGCGAATTCAAGCCAGAGTAACATGTTGATATTGCAAGAGAGTTGCGCAGACTCTACGGGTTCATTTGTGATCTATGCTCCGGTAGATATAGTGGCAATGAACGTGGTTTTGAACGGAGGAGACCCTGATTACGTGGCGCTTCTTCCTTCTGGATTTGCTATTCTCCCAGATGGGACCACTGCACATGGAGGAAGCATAGGTGACACTGGACATGGTGGATCTCTTTTGACTGTGGCCTTCCAAATCTTGGTTGATTCAGTTCCAACTGCAAAACTCTCTCTTGGATCTGTTGCCACCGTTAACAATCTCATTGCCTGCACTGTGGAGAGAATTAAGGCTGCTTTGTCTGGTGAAGTTGCTTGA 2346 0.4744 MPAGIMIPARNMPSMIGRNGNVGGFGLSSGLSLGQIENHKAPESQRSVEMFQPNLMEAGQLLPLDMPQNTSESDVPRIREDDFDSATKSGSENQEGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQIKTQHERHENTQLRTENDKLRADNMRFREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVSYPLLSPSVPPRPLELGIGGGFGGQPAGIGGDMYGGAAGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMGDPLWLTTLDGTTTVLNEDEYIRSFPRGIGPKPAGFKCEASRETAVVIMNHVSLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHGDGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCERLACAMATNIPTVDVGVITNQDGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVSPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCADSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTAHGGSIGDTGHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKAALSGEVA 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03077 781 Pfam START domain 303 522 IPR002913 GO:0008289
Viun5g03077 781 Gene3D - 353 519 IPR023393 -
Viun5g03077 781 SUPERFAMILY Homeodomain-like 99 166 IPR009057 -
Viun5g03077 781 FunFam Homeobox-leucine zipper protein GLABRA 2 302 521 - -
Viun5g03077 781 ProSiteProfiles START domain profile. 293 525 IPR002913 GO:0008289
Viun5g03077 781 FunFam Homeobox-leucine zipper protein HDG1 95 182 - -
Viun5g03077 781 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 107 776 IPR042160 -
Viun5g03077 781 Pfam Homeodomain 109 164 IPR001356 GO:0003677
Viun5g03077 781 Coils Coil 172 192 - -
Viun5g03077 781 ProSiteProfiles 'Homeobox' domain profile. 106 166 IPR001356 GO:0003677
Viun5g03077 781 SUPERFAMILY Bet v1-like 542 773 - -
Viun5g03077 781 CDD START_ArGLABRA2_like 297 521 - -
Viun5g03077 781 SMART START_1 302 522 IPR002913 GO:0008289
Viun5g03077 781 CDD homeodomain 109 167 IPR001356 GO:0003677
Viun5g03077 781 ProSitePatterns 'Homeobox' domain signature. 141 164 IPR017970 GO:0000981|GO:0006355
Viun5g03077 781 SMART HOX_1 107 170 IPR001356 GO:0003677
Viun5g03077 781 Gene3D - 94 182 - -
Viun5g03077 781 MobiDBLite consensus disorder prediction 82 117 - -
Viun5g03077 781 SUPERFAMILY Bet v1-like 293 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03077 Viun-Chr5 41882634 41889353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03077 50 781 Homeobox Transcription Factor Family AT1G05230 77.883 0.0 1167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun5g03077 START 5.8e-58 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03077 K09338 - gmx:100809556 1449.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03077 5 41882634 41889353 Viun5g03077 5 41882634 41889353 ECH
Viun5g03077 5 41882634 41889353 Viun11g01568 11 32083964 32090184 PCT