Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03072 ATGAACGACCTTCTCACTGATTCATTTGTTGGTGAAGCTAGTAATGGCCAGCCTTCTAGAGAAAGTGACGTTGAAATGGGACAGGTTCCGAGAAGCAACTCTGATATGGGAATGGAAGCCTTTAATAAGCAGATCCATGAGGCTGATAAACAGATCGATAAGCTGGCGGTGCTACTTCAAAAGCTAAAGGAAGCTAATGAGGAATCGAAAGCTGTTACAAAAGCATCTGCCATGAAAGGTATCAAGAAAAGGATGGAGAAGGATATTGATGAAGTTGGAAAGATTGCTCATGGTGTCAAAACAAAGATTGAGGCTATAAACAGAGATAACCTATCTAATAGACAAAAGCCTGGCTGTGAGAAGGGAACAGGTATTGACAGAGCAAGAATGAATATGACAAATGCCTTGGCTAAAAAATTCAAGGATCTCATGACAGAGTTCCAGACTCTTAGACAAAGAATACAAGATGAATATCGTGAGGTTGTGGAGAGAAGAGTTATAACAGTTACTGGGACTAGGCCAGATGATGAGACAATAGATCACCTGATAGAAACTGGAAACAGTGAGCAAATCTTCCAGAGAGCAATCCTAGAAGCAGGCCGAGGACAGGTAGTAAACACAGTAGAAGAAATTCAGGAGAGACATGATGCTGTGAAAGAGATTGAGAAAAAACTTCTTGATTTACACCAGATTTACCTTGACATGGCAGTCTTAGTTGATGCACAAGGAGAAATTCTAGATAACATTGAAAGTCAGGTCAACAACGCAGTCGATCATGTCCAGAGAGGGACAAGTGCACTTCAAAATGCTAAGAAACTCCAGAAGAACTCACGAAAATGGATGTGCATTGCCATCATTATACTGTTGATAATAGTAGCTATCATAGTTGTGGGTGTTCTCAAACCTTGGAAGAGTAGCTAG 921 0.4072 MNDLLTDSFVGEASNGQPSRESDVEMGQVPRSNSDMGMEAFNKQIHEADKQIDKLAVLLQKLKEANEESKAVTKASAMKGIKKRMEKDIDEVGKIAHGVKTKIEAINRDNLSNRQKPGCEKGTGIDRARMNMTNALAKKFKDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDHLIETGNSEQIFQRAILEAGRGQVVNTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQVNNAVDHVQRGTSALQNAKKLQKNSRKWMCIAIIILLIIVAIIVVGVLKPWKSS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03072 306 SUPERFAMILY t-snare proteins 35 263 IPR010989 GO:0016020|GO:0016192
Viun5g03072 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
Viun5g03072 306 SMART SynN_4 33 159 IPR006011 GO:0016020
Viun5g03072 306 SMART tSNARE_6 203 270 IPR000727 -
Viun5g03072 306 Pfam Syntaxin 41 243 IPR006011 GO:0016020
Viun5g03072 306 FunFam Syntaxin 132 201 301 - -
Viun5g03072 306 FunFam Syntaxin 132 33 162 - -
Viun5g03072 306 Gene3D - 38 166 - -
Viun5g03072 306 Gene3D - 201 301 - -
Viun5g03072 306 PANTHER SYNTAXIN 37 289 IPR045242 -
Viun5g03072 306 CDD SynN 38 195 IPR006011 GO:0016020
Viun5g03072 306 Coils Coil 38 75 - -
Viun5g03072 306 CDD SNARE_syntaxin1-like 207 268 - -
Viun5g03072 306 MobiDBLite consensus disorder prediction 1 35 - -
Viun5g03072 306 Pfam SNARE domain 244 296 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03072 Viun-Chr5 41820634 41824845 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03072 1 303 SNARE and Associated Proteins AT3G03800 63.036 1.10e-126 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03072 K08486 - gmx:100800991 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03072 5 41820634 41824845 Viun5g03072 5 41820634 41824845 ECH