LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun5g03067	ATGAGGGTTGCTATTGTCACAAGAGGAAACCAATTTTTCATCGAAGTTGGTGCCCAAGAAACAGTTGTAGCAATCAAGAGGAAAATAGAGCAACTTCATGGGGTTCCAGTGGCTTCACAAGTCCTCTCAGTTACTGGGTGGGAACTGGTTGATGGATTGGACATGGATGATTATCCAATAGTCACTGAAGGTACAAAAATTGACCTCACCATCAAACCAGCAGAGCCACACCCTAACAAAATGCAAATCACAGTCAAATTTTCAGCTAAAAAGCTCAGCATTGAGGTGGACAGAACAGACACTGTTCGTAGCTTGAAGGAAAAAATTCACATCATTGATAGCACCCCCATCAAAAGAATGACACTTTACTTTTCAGGGACTGAACTTGATGAAGATTTTAGAACCTTAAGTGAATATGGCATTGGTGAATTTTGTGAGATTGTTGTGTTCCTCAAGACCATGAATCGATCAAGAGATGAACCCCCCACAAGGAAGTTAAGCTTGGTTGTGCAAACTTCTTCTAGTTTGCTTAATGCAGCCACCATTCCATTGGAGATGAGAGATGCAAACACAGTGAATGAGTTGAAGCAGTTACTGATAAGCAGAAAGATTCTTCCTTCTGATGACTATTTGTTTATACACAGACAGAGGATTATGCGTGATAGTTGTAGCCTCAGGTGGCATGGAGTTGAAAATGGAGACTGTCTCTATGTGTTTAAGGGAACAGTTAGCACTAGTGGCTATGCATGA	750	0.412	MRVAIVTRGNQFFIEVGAQETVVAIKRKIEQLHGVPVASQVLSVTGWELVDGLDMDDYPIVTEGTKIDLTIKPAEPHPNKMQITVKFSAKKLSIEVDRTDTVRSLKEKIHIIDSTPIKRMTLYFSGTELDEDFRTLSEYGIGEFCEIVVFLKTMNRSRDEPPTRKLSLVVQTSSSLLNAATIPLEMRDANTVNELKQLLISRKILPSDDYLFIHRQRIMRDSCSLRWHGVENGDCLYVFKGTVSTSGYA	249

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun5g03067	249	ProSiteProfiles	Ubiquitin domain profile.	81	156	IPR000626	GO:0005515
	Viun5g03067	249	Pfam	Ubiquitin family	83	153	IPR000626	GO:0005515
	Viun5g03067	249	Pfam	Ubiquitin family	7	73	IPR000626	GO:0005515
	Viun5g03067	249	SUPERFAMILY	Ubiquitin-like	73	160	IPR029071	-
	Viun5g03067	249	CDD	Ubl_ubiquitin_like	181	239	-	-
	Viun5g03067	249	SMART	ubq_7	81	152	IPR000626	GO:0005515
	Viun5g03067	249	SMART	ubq_7	166	241	IPR000626	GO:0005515
	Viun5g03067	249	SMART	ubq_7	1	72	IPR000626	GO:0005515
	Viun5g03067	249	ProSiteProfiles	Ubiquitin domain profile.	166	238	IPR000626	GO:0005515
	Viun5g03067	249	PANTHER	UV EXCISION REPAIR PROTEIN RAD23	81	152	-	-

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun5g03067	81	141	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	40.323	3.59e-06	43.5

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun5g03067	-		-	gmx:100781557	429.483

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun5g03067	5	41792907	41793998	Viun5g03067	5	41792907	41793998	ECH

Showing 1 to 1 of 1 entries