Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun5g03067 | ATGAGGGTTGCTATTGTCACAAGAGGAAACCAATTTTTCATCGAAGTTGGTGCCCAAGAAACAGTTGTAGCAATCAAGAGGAAAATAGAGCAACTTCATGGGGTTCCAGTGGCTTCACAAGTCCTCTCAGTTACTGGGTGGGAACTGGTTGATGGATTGGACATGGATGATTATCCAATAGTCACTGAAGGTACAAAAATTGACCTCACCATCAAACCAGCAGAGCCACACCCTAACAAAATGCAAATCACAGTCAAATTTTCAGCTAAAAAGCTCAGCATTGAGGTGGACAGAACAGACACTGTTCGTAGCTTGAAGGAAAAAATTCACATCATTGATAGCACCCCCATCAAAAGAATGACACTTTACTTTTCAGGGACTGAACTTGATGAAGATTTTAGAACCTTAAGTGAATATGGCATTGGTGAATTTTGTGAGATTGTTGTGTTCCTCAAGACCATGAATCGATCAAGAGATGAACCCCCCACAAGGAAGTTAAGCTTGGTTGTGCAAACTTCTTCTAGTTTGCTTAATGCAGCCACCATTCCATTGGAGATGAGAGATGCAAACACAGTGAATGAGTTGAAGCAGTTACTGATAAGCAGAAAGATTCTTCCTTCTGATGACTATTTGTTTATACACAGACAGAGGATTATGCGTGATAGTTGTAGCCTCAGGTGGCATGGAGTTGAAAATGGAGACTGTCTCTATGTGTTTAAGGGAACAGTTAGCACTAGTGGCTATGCATGA | 750 | 0.412 | MRVAIVTRGNQFFIEVGAQETVVAIKRKIEQLHGVPVASQVLSVTGWELVDGLDMDDYPIVTEGTKIDLTIKPAEPHPNKMQITVKFSAKKLSIEVDRTDTVRSLKEKIHIIDSTPIKRMTLYFSGTELDEDFRTLSEYGIGEFCEIVVFLKTMNRSRDEPPTRKLSLVVQTSSSLLNAATIPLEMRDANTVNELKQLLISRKILPSDDYLFIHRQRIMRDSCSLRWHGVENGDCLYVFKGTVSTSGYA | 249 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun5g03067 | 249 | ProSiteProfiles | Ubiquitin domain profile. | 81 | 156 | IPR000626 | GO:0005515 | |
Viun5g03067 | 249 | Pfam | Ubiquitin family | 83 | 153 | IPR000626 | GO:0005515 | |
Viun5g03067 | 249 | Pfam | Ubiquitin family | 7 | 73 | IPR000626 | GO:0005515 | |
Viun5g03067 | 249 | SUPERFAMILY | Ubiquitin-like | 73 | 160 | IPR029071 | - | |
Viun5g03067 | 249 | CDD | Ubl_ubiquitin_like | 181 | 239 | - | - | |
Viun5g03067 | 249 | SMART | ubq_7 | 81 | 152 | IPR000626 | GO:0005515 | |
Viun5g03067 | 249 | SMART | ubq_7 | 166 | 241 | IPR000626 | GO:0005515 | |
Viun5g03067 | 249 | SMART | ubq_7 | 1 | 72 | IPR000626 | GO:0005515 | |
Viun5g03067 | 249 | ProSiteProfiles | Ubiquitin domain profile. | 166 | 238 | IPR000626 | GO:0005515 | |
Viun5g03067 | 249 | PANTHER | UV EXCISION REPAIR PROTEIN RAD23 | 81 | 152 | - | - | |
Viun5g03067 | 249 | ProSiteProfiles | Ubiquitin domain profile. | 1 | 60 | IPR000626 | GO:0005515 | |
Viun5g03067 | 249 | SUPERFAMILY | Ubiquitin-like | 177 | 241 | IPR029071 | - | |
Viun5g03067 | 249 | SUPERFAMILY | Ubiquitin-like | 1 | 76 | IPR029071 | - | |
Viun5g03067 | 249 | Gene3D | - | 153 | 245 | - | - | |
Viun5g03067 | 249 | CDD | Ubl_ubiquitin_like | 83 | 150 | - | - | |
Viun5g03067 | 249 | Gene3D | - | 80 | 152 | - | - | |
Viun5g03067 | 249 | Gene3D | - | 1 | 72 | - | - |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun5g03067 | 81 | 141 | Cytoplasmic Ribosomal Protein Gene Family | AT3G52590 | 40.323 | 3.59e-06 | 43.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun5g03067 | - | - | gmx:100781557 | 429.483 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Viun5g03067 | 5 | 41792907 | 41793998 | Viun5g03067 | 5 | 41792907 | 41793998 | ECH |