Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03065 ATGGAACCCATTTGCCCTATTGGGTTGGCGTGTGCCTCTGAAATCTCTGCTCTTCTCTCTCCTCCCTCACCTCTTCAAGTACAGGAGTATTATCACAACCTTTTGTCTTCAAGAGGGTGCACTGGTATCTCAGTCAAACAGGATGGCACCTTTGGAAAAGGTGTATATGCAGACATGGACTTCAAAGAGGGAAAACTTGTTCTGAAGGACCCCATGTTTGTAGGGGTTCAACATTCCCTCAACAAGATTGATTGTTTGGTCTGTAGTTTCTGCTTTCGTTTTATTGGTTCCATTGAACTTCAAATAGGAAGGAGGCTCTACATGAAGCAACTAAGGGCCAATGAGAGTCATGGATGTGATGTCGGAAACTCTTCACAACACTTCCAAGGAATGGATTCATCTGATGAAGAAGAGAGTACTGAGCAATGTACTTCTGGGATTTCCAAAACTAAGGTTCCTCTTCCTGAGGGTGTTGTGGAATCATTAATGAATGGCCAATTGGTGTTGCCTTGCTCCGAGAAGTTCTCCTTGTTGCCGGCTGTTCCATGCCCTGGTGGATGTGGAGAAGCTTACTATTGCAGCATGTCATGTGCAGAGGCTGATTGGGAATCCTCCCATTTGCTACTCTGTACTGGTGAGAGCTGTGATCCAGCTCGTAGAGAGGCACTCCTTAAATTCATCAAACATGCTAATGAAACAAATGATATATTCATACTTGCAGCAAAGGCTATTTCTTCAACCATATTAAGATATCGCAAGTTAAAAGCAGCCAGTCTTGAAAAACAAGTGAAACATGATACATCCTGTGTTTCAAATCACCGTAGTGTATCTCTTCTTTTTGAAGCTTGGAGGCCTATATCAATGGGACACAAGAGAAGGTGGTGGGATTGCATTGCTTTGCCAGATGATGTGGATTCTTCTGACGAAGCTTCGTTCAGGCTGCAAATCAAAGAGTTGGCATTTGAGTCTCTACAACTTCTTAAGGCAGCCATATTTGACAAGGAATGTGAGCCATTATTCTCCCTTGAAATCTATGGGCAAATCATCGGCATGTTTGAGCTGAATAATCTTGATTTGGTTGTGGCTTCTCCGGTGGAGGATTACTTTTTATACATTGATGATCTGACACATCCTAGCAAGGAAGAGGCTGAGAAAATTACTCAACCTATTCTGGATGCACTTGGTGAAGACTATTCTATTTGTTGCGAAGGGACTGCATTTTTTCCTTTGCAAAGCTGCATGAACCATTCATGTTGTCCTAATGCCAAAGCTTTCAAAAGAGATGAGGATAAAGATGGCCAAGCAACTATAATTGCACAGAGCTTAATTCGTAAAGGAGAAGAGATAACCATATCATATGTTGATGAGGACCTTCCATATGAGGAGAGACAGGCATCTCTTGCAGATTATGGTTTCAGATGCAGGTGTCCAAAGTGCATTAAAGAAGAACCATAA 1455 0.4234 MEPICPIGLACASEISALLSPPSPLQVQEYYHNLLSSRGCTGISVKQDGTFGKGVYADMDFKEGKLVLKDPMFVGVQHSLNKIDCLVCSFCFRFIGSIELQIGRRLYMKQLRANESHGCDVGNSSQHFQGMDSSDEEESTEQCTSGISKTKVPLPEGVVESLMNGQLVLPCSEKFSLLPAVPCPGGCGEAYYCSMSCAEADWESSHLLLCTGESCDPARREALLKFIKHANETNDIFILAAKAISSTILRYRKLKAASLEKQVKHDTSCVSNHRSVSLLFEAWRPISMGHKRRWWDCIALPDDVDSSDEASFRLQIKELAFESLQLLKAAIFDKECEPLFSLEIYGQIIGMFELNNLDLVVASPVEDYFLYIDDLTHPSKEEAEKITQPILDALGEDYSICCEGTAFFPLQSCMNHSCCPNAKAFKRDEDKDGQATIIAQSLIRKGEEITISYVDEDLPYEERQASLADYGFRCRCPKCIKEEP 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03065 484 CDD SET_SMYD 393 479 - -
Viun5g03065 484 ProSiteProfiles SET domain profile. 41 454 IPR001214 GO:0005515
Viun5g03065 484 Gene3D SET domain 371 483 IPR046341 -
Viun5g03065 484 Pfam SET domain 52 453 IPR001214 GO:0005515
Viun5g03065 484 SUPERFAMILY HIT/MYND zinc finger-like 179 211 - -
Viun5g03065 484 SUPERFAMILY SET domain 40 479 IPR046341 -
Viun5g03065 484 MobiDBLite consensus disorder prediction 126 148 - -
Viun5g03065 484 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2 14 483 IPR044237 GO:0008168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Viun5g03065 SET 2.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03065 - - gmx:100803651 869.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03065 5 41771310 41777024 Viun5g03065 5 41771310 41777024 ECH