Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03058 ATGGAACCTATGTGTGAGTTTTGTTGGGCTGTGAGAGCTGTGGTATACTGCAAGTCAGATTCTGCTCGTCTCTGCTTGCATTGCGATGGTTGTGTGCACTCTGCAAATTCTCTGTCTCGCAGGCATTCGCGTTCTCTCCTTTGTGATAAGTGCAATTCCCAGCCAGCAATGATAAGATGCATGGATCATAAGTTGTCCTCGTGTCAAGTTTGTGACTGGAACCCGAATGATTGTTCTGCAGTGGGACATAGGCGTCTCACACTGAATTGTTACTCTGGTTGTCCTTCTTTGACTGAGTTTTCTAGGATGTGGTCCTTTGTTTTTGAAGTTAGTTCTTCACAAGGTGGTTGGGAATCTGTTAGCACTTTGCCAAAAAGTGAGAGCTGCACTAGCCTGGAGCAACCTGATCACAATGGTGGTTCCTTTGGTTTGGTGAGTGAGAAGTTGGATGAAATTGAATCTTGTGTCAGATATGAACCTTGGATGGGGCAATCTCACATCATTCCTTCAAATCCAAATTACACACCGTACGGCAAAGAAGACGGATTTTTCCTGGCTCAGGACTCAAACCAGCCAAAGCCGCAGGAGTGTACTGATCGAGGAACTGGTGATGGGAATGTACTCTCTGAAGGTCTCAATGTGGACAGCGGTCCAATAAATTTTGAAAGTGCTGATGAAATATTTGGCTGTTCACAAGCTGCCACAAGATACCCTCTTGAAGATGGAGGAATGGACTGTCTGTTGATGGATAAAAAACTATCAGTCACCGAATCCAGCTCACTTATTGAGAGTGCCTTAGAGGCATCATCATCAATTCAACAAGATTGTGTGGCTTTTCAGTCATCTAGGACTGGTGGATCAGTTAGTATGTTGCCGGTTATGAACAGTAACACAAACTGTGCACTTATGAATCCTAGCAGCACTGGCAACATCAGTCTGGGATTTCCTCAGGGTCAAGTTCATTCAAGCATACCTCTTCAATTAGGCAACATTGTGGGTGAAAATAGTTCTACTGAATATCAAGACTGCGGGATATCGGCAATGTTTTTGCCGGGTGAAATCCCCTGGGAATCAAATTTGGAGGGTACATGCCCACAAGCAAGGGATAAGGCTAAAATGAGATACAATGAGAAAAAGAAAACTCGAACGTTTGGTAAGCAAATAAGATATGCATCTCGCAAAGCAAGGGCTGATACAAGAAAACGTGTGAAAGGTAGATTTGTTAAAGCAGGCGAAGCATATGATTATGACCCTCTTGTGACAAGGGAGGTCTAA 1275 0.4392 MEPMCEFCWAVRAVVYCKSDSARLCLHCDGCVHSANSLSRRHSRSLLCDKCNSQPAMIRCMDHKLSSCQVCDWNPNDCSAVGHRRLTLNCYSGCPSLTEFSRMWSFVFEVSSSQGGWESVSTLPKSESCTSLEQPDHNGGSFGLVSEKLDEIESCVRYEPWMGQSHIIPSNPNYTPYGKEDGFFLAQDSNQPKPQECTDRGTGDGNVLSEGLNVDSGPINFESADEIFGCSQAATRYPLEDGGMDCLLMDKKLSVTESSSLIESALEASSSIQQDCVAFQSSRTGGSVSMLPVMNSNTNCALMNPSSTGNISLGFPQGQVHSSIPLQLGNIVGENSSTEYQDCGISAMFLPGEIPWESNLEGTCPQARDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAGEAYDYDPLVTREV 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03058 424 ProSiteProfiles CCT domain profile. 368 410 IPR010402 GO:0005515
Viun5g03058 424 CDD Bbox1_BBX-like 5 47 - -
Viun5g03058 424 Pfam CCT motif 368 410 IPR010402 GO:0005515
Viun5g03058 424 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Viun5g03058 424 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 413 - -
Viun5g03058 424 SMART bboxneu5 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03058 Viun-Chr5 41740698 41744672 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03058 1 418 C2C2-CO-like Transcription Factor Family AT3G21880 43.230 3.55e-103 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun5g03058 CCT 1.4e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03058 - - vra:106761521 794.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03058 5 41740698 41744672 Viun5g03058 5 41740698 41744672 ECH