Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03049 ATGGACATGAATTCCTCAAGTGGTGCCTCCGGTTGGCTTTATGATTATGGTTTTGATATCCCTGTTGCTGGTGCTGACTTCATGGTTGCAGCAGACTCTGGAGGTTTTAGTTGGGGGCCTCAAAATCACACCTTGAAGGGTCCTTCACATACGAGCTTGGAAATGGAATACTCACTGGATTCAACTGTTCTGGAAAATAGTCCTTCAAAGCGGTTAAGGACTGAGTCATGTGCATCTGGCGCCAAGGCGTGTCGCGAAAAAATGCGAAGGGATAAACTGAATGATAGGTTTCTGGAATTGAGTTCCATCTTGGAGCCTGGTAGGCCGCCCAAAACAGACAAAGTTGCAATATTAAGTGATGCTGCTCGAGTGGTAGTCCAATTGAGAAATGAAACCGAGAGGCTTAAGGAAATGAATGATGAACTACAGGGAAAAGTTAAAGAATTGAAGGCTGAGAAGAATGAGCTTCGTGATGAGAAGAATATGCTGAAGGATGAGAAAGAAAAGTTGGAGCAACAGGTAAAACTGACAAATATACATAACAGTTTCGTCCCTCAAGCCCAAGCTGCTAAAGGACAAGTTGGTAGCCACAAGCTGATACCTTTCATTGGCTATCCTGGAATTGCTATGTGGCAGTTTATGCCTCCTGCTGCAGTTGATACATCAAAGGATCATCTGCTTCGACCTCCAGTTGCATAA 699 0.4421 MDMNSSSGASGWLYDYGFDIPVAGADFMVAADSGGFSWGPQNHTLKGPSHTSLEMEYSLDSTVLENSPSKRLRTESCASGAKACREKMRRDKLNDRFLELSSILEPGRPPKTDKVAILSDAARVVVQLRNETERLKEMNDELQGKVKELKAEKNELRDEKNMLKDEKEKLEQQVKLTNIHNSFVPQAQAAKGQVGSHKLIPFIGYPGIAMWQFMPPAAVDTSKDHLLRPPVA 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03049 232 PANTHER BHLH TRANSCRIPTION FACTOR 4 232 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Viun5g03049 232 SMART finulus 83 134 IPR011598 GO:0046983
Viun5g03049 232 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 83 153 IPR036638 GO:0046983
Viun5g03049 232 Pfam Helix-loop-helix DNA-binding domain 81 127 IPR011598 GO:0046983
Viun5g03049 232 Gene3D - 69 127 IPR036638 GO:0046983
Viun5g03049 232 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 77 128 IPR011598 GO:0046983
Viun5g03049 232 Gene3D arf6 gtpase in complex with a specific effector, jip4 128 179 - -
Viun5g03049 232 CDD bHLH_AtILR3_like 82 157 - -
Viun5g03049 232 Coils Coil 118 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03049 Viun-Chr5 41684799 41686896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03049 35 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 55.502 7.36e-72 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun5g03049 HLH 7.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03049 - - gmx:100806838 406.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03049 5 41684799 41686896 Viun5g03049 5 41684799 41686896 ECH