Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03040 ATGCACGTCACGTCCTCACACAGCCACATGAAAGCTGAGCTTAAGAGCACGTCCATTTCCTTTCAAAACCCTACCACTCTCTTTAACACACCTCACAACCCTCTCGCTGGAGCACTCAAAGGTTGTCTGGGAAGCCTGGATGGAGCTTGTATTGAGAAGCTCTTGCTCCACTGTGCCAGCGCTTTGGAGAGCAACGACATCACCTTGGCTCAACAAGTCATGTGGGTGCTCAACAACGTTGCTTCCCCTGTCGGGGACACAAACCAAAGACTCACCTCGTGGTTCCTAAGGGCATTGATCTCTAGGGCTTCAAGAATTTGCCCTACTGCCATGAGTTTCAAAGGAAGCAACACCATTCAGAGGAGGCTGATGAGCGTCACCGAGCTCACCGGGTATGTGGATCTCATTCCTTGGCATAGATTTGGGTATTGTGCATCCAATAATGAAATTTACAAAGCAATAACTGGGTACCAAAGGGTACATATTCTAGATTTTAGTACAACCCATTGTGTGCAATGGCCTACTTTTATAGATGCATTGGCCAAAAACCCTGAAGGACCTCCTTCACTCAGAATCACAGTTCCATTTTGTAGACCCCATGTACCCCCCATGGTCAATGTATCCATACACGAGGTTGGTTTACGTTTGGGGAATTTCGCCAAGTTCAGAGATGTCCCTTTTGAATTCAACGTTATAGGAAACACAGGACCGTTAACACCTGCGGAATTTAGCGATGAATCATCTAGCTTCCATTTTGAAGCAATGTTAAGTCTCTTGAACCCTACTACGCTAAACCTTAGGGAAGATGAAGCTTTGGTCATAAATTGCCAAAATTGGCTGCGCTATTTGTCTGATGATAGAAAGGGAAGCCGCCAAAGTCTTTCCCTCAGGGATGCTTTTTTAAATCTAATAAAAGGTCTTAACCCGCGGATTGTGCTCTTGGTTGATGAGGATTGTGACCTTAGTGCATCTAGTCTCACATCAAGAATCACCACATGTTTCAACCATCTTTGGATACCCTTTGACGCATTGGAGACGTTTTTGCCTAAAGATAGTGGCCAGAGGGCGGAGTTTGAATCCGACATAGGGCAGAAGATTGAGAACATCATAAGCTTTGAAGGGCACCAAAGAATCGAGAGGTTGGAGTGTGGGGTGCAAATGTCCCAAAGAATGAAAAATGTTGGTTACCTCAGTGTTCCGTTTTGTGATGAAACTGTTAGGGAAGTTAAAGGGTTGCTAGATGAACATGCTAGTGGGTGGGGGATGAAAAGAGAAGAAGGTATGCTAGTTCTCACATGGAAAGGAAACAACTGTGTCTTTGCGACAGCTTGGGTCCCCTGTGAAATAAGGGATCATGTTGGAATGGATGCAAGTCTGCCATAA 1383 0.4534 MHVTSSHSHMKAELKSTSISFQNPTTLFNTPHNPLAGALKGCLGSLDGACIEKLLLHCASALESNDITLAQQVMWVLNNVASPVGDTNQRLTSWFLRALISRASRICPTAMSFKGSNTIQRRLMSVTELTGYVDLIPWHRFGYCASNNEIYKAITGYQRVHILDFSTTHCVQWPTFIDALAKNPEGPPSLRITVPFCRPHVPPMVNVSIHEVGLRLGNFAKFRDVPFEFNVIGNTGPLTPAEFSDESSSFHFEAMLSLLNPTTLNLREDEALVINCQNWLRYLSDDRKGSRQSLSLRDAFLNLIKGLNPRIVLLVDEDCDLSASSLTSRITTCFNHLWIPFDALETFLPKDSGQRAEFESDIGQKIENIISFEGHQRIERLECGVQMSQRMKNVGYLSVPFCDETVREVKGLLDEHASGWGMKREEGMLVLTWKGNNCVFATAWVPCEIRDHVGMDASLP 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03040 460 ProSiteProfiles GRAS family profile. 42 445 IPR005202 -
Viun5g03040 460 Pfam GRAS domain family 52 444 IPR005202 -
Viun5g03040 460 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 51 434 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03040 Viun-Chr5 41604879 41606897 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03040 25 447 GRAS Transcription Factor Family AT3G49950 43.750 4.44e-117 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Viun5g03040 GRAS 1.6e-84 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03040 - - gmx:100805056 860.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03040 5 41604879 41606897 Viun5g03040 5 41604879 41606897 ECH