Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03036 ATGCAGATGTTAGCGAAAGCACATAGTAAGGGGGAGGGAACCAAGTCCCTGGCTAAGATACTGGCGAAATGGAAAGAATATAATGCCCAGCTTGATTCCTGTAGTGATGCGGATAAACCAGTTCGCAAAGTTCCTGCAAAGGGATCGAAAAAAGGGTGTATGAAAGGTAAAGGTGGGCCTGAGAACTCGCGGTGTAACTACAGAGGTGTTAGGCAGAGAACTTGGGGAAAGTGGGTTGCTGAAATCAGAGAGCCAAACAGAGGGAACAGGCTCTGGCTAGGTACTTTTCCCACTGCCATTGGAGCTGCTCTTGCATATGATGAAGCAGCGAGGGCAATGTATGGATCCTGTGCCCGTCTCAACTTTCCCAATGTTTCAGTTTCCAGTTTCTCCGAGGAATCCTTGAAAGATTCTCCAATGGCGAATCATTCTGGTTCCTCAATGGCAGTGTCTGCAAATGAATCCATGGTTTCACCTACTAACTCTAAGGGGGGAGGAGCAGAAGAGGATGTTGATATGGAGCCCATTTCCTTATCCTTAAGTGTAAAACATGAGAACGGGGAAGGTGAATCAGGGATAAGTTCATCCCCTCCTTCTTCTTCTTCATAG 609 0.4696 MQMLAKAHSKGEGTKSLAKILAKWKEYNAQLDSCSDADKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGNRLWLGTFPTAIGAALAYDEAARAMYGSCARLNFPNVSVSSFSEESLKDSPMANHSGSSMAVSANESMVSPTNSKGGGAEEDVDMEPISLSLSVKHENGEGESGISSSPPSSSS 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03036 202 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Viun5g03036 202 MobiDBLite consensus disorder prediction 134 202 - -
Viun5g03036 202 MobiDBLite consensus disorder prediction 38 65 - -
Viun5g03036 202 SUPERFAMILY DNA-binding domain 66 123 IPR016177 GO:0003677
Viun5g03036 202 FunFam Ethylene-responsive transcription factor 2 65 124 - -
Viun5g03036 202 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 174 - -
Viun5g03036 202 MobiDBLite consensus disorder prediction 188 202 - -
Viun5g03036 202 Gene3D AP2/ERF domain 66 125 IPR036955 GO:0003700|GO:0006355
Viun5g03036 202 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
Viun5g03036 202 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
Viun5g03036 202 CDD AP2 65 124 IPR001471 GO:0003700|GO:0006355
Viun5g03036 202 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Viun5g03036 202 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Viun5g03036 202 MobiDBLite consensus disorder prediction 134 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03036 Viun-Chr5 41542810 41544563 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03036 10 123 AP2-EREBP Transcription Factor Family AT2G40350 66.102 5.17e-52 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun5g03036 AP2 3.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03036 - - gmx:100499747 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03036 5 41542810 41544563 Viun11g01538 11 31620721 31622447 PCT