Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03035 ATGTTAGCGAAAGCACATAGTAAGGGGGAGGGAACCAAGTCCCTGGCTAAGATACTGGCGAAATGGAAAGAATATAATGCCCAGCTTGATTCCTGTAGTGATGCGGATAAACCAGTTCGCAAAGTTCCTGCAAAGGGATCGAAAAAAGGGTGTATGAAAGGTAAAGGTGGGCCTGAGAACTCGCGGTGTAACTACAGAGGTGTTAGGCAGAGAACTTGGGGAAAGTGGGTTGCTGAAATCAGAGAGCCAAACAGAGGGAACAGGCTCTGGCTAGGTACTTTTCCCACTGCCATTGGAGCTGCTCTTGCATATGATGAAGCAGCGAGGGCAATGTATGGATCCTGTGCCCGTCTCAACTTTCCCAATGTTTCAGTTTCCAGTTTCTCCGAGGAATCCTTGAAAGATTCTCCAATGGCGAATCATTCTGGTTCCTCAATGGCAGTGTCTGCAAATGAATCCATGGTTTCACCTACTAACTCTAAGGGGGGAGGAGCAGAAGAGGATGTTGATATGGAGCCCATTTCCTTATCCTTAAGTGTAAAACATGAGAACGGGGAAGGTGAATCAGGGATAAGTTCATCCCCTCCTTCTTCTTCTTCATAG 603 0.4693 MLAKAHSKGEGTKSLAKILAKWKEYNAQLDSCSDADKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGNRLWLGTFPTAIGAALAYDEAARAMYGSCARLNFPNVSVSSFSEESLKDSPMANHSGSSMAVSANESMVSPTNSKGGGAEEDVDMEPISLSLSVKHENGEGESGISSSPPSSSS 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03035 200 MobiDBLite consensus disorder prediction 186 200 - -
Viun5g03035 200 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
Viun5g03035 200 CDD AP2 63 122 IPR001471 GO:0003700|GO:0006355
Viun5g03035 200 MobiDBLite consensus disorder prediction 132 160 - -
Viun5g03035 200 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Viun5g03035 200 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Viun5g03035 200 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Viun5g03035 200 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Viun5g03035 200 MobiDBLite consensus disorder prediction 132 200 - -
Viun5g03035 200 Gene3D AP2/ERF domain 64 123 IPR036955 GO:0003700|GO:0006355
Viun5g03035 200 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Viun5g03035 200 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 172 - -
Viun5g03035 200 FunFam Ethylene-responsive transcription factor 2 63 122 - -
Viun5g03035 200 MobiDBLite consensus disorder prediction 37 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03035 Viun-Chr5 41542810 41544583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03035 8 121 AP2-EREBP Transcription Factor Family AT2G40350 66.102 6.26e-52 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun5g03035 AP2 3.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03035 - - gmx:100527471 351.288