Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03032 ATGAGAAGTGAAGGGGTTGTGTTGTCGTTCTCCCTTCTTCTTCTATGGCTGCCGTTATGCTTCCAAATATGTTTGGGTGGAGATACTCTGAAGGTTAACCAGAACATAACTCAGGACTCCTCCGAAGGAAACCTTGTTTCATCAAACGCCACATTTGAGCTGGGCTTCTTTTCTCCTTCTGGTATGGAAAATGGAGAGAAAAGATACTTGGGGATATGGTATCACGGCTTGGAGCCACAAACAGTGGTGTGGGTTGCTAATAGAGATGATCCTGTTGCAGATTCCAGTGGAGTTTTTCGAATTGCGGAGGATGGAAATCTGGTGGTAGAAGATGCATTCAAAACCCGCTGGTCTTCTGAACTTGGAGCATCCTCGTCCTCAAACAGAACACTGCAGCTCCTAGATTCTGGGAATCTAGTACTAAAAGAGGATGACTCTGAAACGACATACCTGTGGGAAAGCTTCCAGAACCCAACAGACACGTTTCTTCCCGGCATGAAAATGGATGCGAGTTTGTCGTTGACTTGTTGGAGAGACTCCGCTAACCCAGCACCTGGGAACTTCACCTTCAAGCTGACTCAACAGGCTGAGACACGGAGCTTCGTTGTGCAATCTCGATCACAAATCTACTGGACACTTGCTGAACTTGACCTTGACAACACAGAAGCGGCTTCCCAAGTGGTATTTAACTTGTTGAACAACGACATCTGGAATACTAAAACGTACAATTATTCTAACAAAACACTCTTCGTATCACAACCTTACACGTACAATAAATCAAGGCTTTTGATGAATTATAGCGGGGAGATAGTGTTTCTGAAGTGGGACGAGAAAGAATTACAATGGAATAAGAAATGGTCGGGGCCAGAGAGCAAGTGTGACATGTATGATTATTGCGGGAGCTTCAGCTTATGTAACAAAGATAACTCCATTCCGTGCAGATGTTTTCCAGGATTCAGTTCTATTCATGTTTCTCGTTCTGACGGAGAATGGAAGTCCAAAGGGTGTGTGAGAAAATCAGCATCGTGTACCAACAACGACGTGATGTTCCTGAACTTCACCAACATAAAAGTGGATGACCCAGACCAAGAAATTGATACTCAAACAGAAGCAGAATGCCAATCCTGGTGCATCAACATGTGTCCACAATCACAGTGCCAGGCATATTCATTTAATACTTCTACATTTCGTGACAGTAATTCATACTCGTGCAATATCTGGACGCGGCCTTTAACTTCTCTTGTTGAGAACTACCCGCGCGGTCGTGATCTTTCTATCTTGGTTAAGACATCAGATATAGCACCAACTGCTAAATCCTGTGAACCTTGCGGCATATATGCGATTCCATATCCGCTGAGCACTGGAGCAAACTGTGGAGACCCCACGTACAACAACTTCAATTGCGACAAATCCACTGGCAAAGTTAGTTTTATGATTCCCGGAGGAAGGTCTTACCCAGTAACTTGGATCGATGAAGATACCAGAATGTTTTTAATTAAAACAGACTATTTCTATTTATTTAATTCCAGTTTCAGCAGTCAAAATAGGACTGATTTTCCGTTTAATATAGCTGAGTATATTGAAGATTCCGTAATAAAAATGAATTGGCTACCAGCGCCAGAACCCCCCTGTAGTAAGCTTACAGACTGCATGAATTGGCCAAATTCAACATGCAGAGCAACAGGGGAAGGTGGAAGTAGGTGCCGTTGTGATTCAAACTATAATTGGAATGACACATTAATCAGCTGCACCCAAGTTCTTTTCCATTCTGTGACAGAAGAGCTATCAGGAAATCATTCAACTCGACTAGAATTGATTCTTTTACCAACTCTTGGTACCCTGGCTGCTGTGACATGCATAATAGCATTTGGCATTGTTTGGAGAAAGAAAAAAGCCCGTAAACTTGATGGAGCAAGCACCCGAATTCAGGAGAGCTTGTATGAGAGTGAAAGACATGTGAAAGGTTTAATTGGCTTAGGAAGTTTAGAAGAAAAAGACATCGAAGGCATTGAAGTGCCCTTTTACACTTTTGCAAGCATTCTTGCAGCTACAGATAATTTCTCAGATTCTAACAAGCTTGGAAGAGGAGGTTACGGACCTGTATACAAGGGAACTTTTCCTGGAGGTCAAGAAATAGCTGTGAAGAGACTTTCAAGTGTTTCCACTCAAGGCCTGCAAGAATTCAAGAATGAGGTTATTTTGATTGCCAAACTTCAACATCGGAACCTTGTTAGACTGAGGGGCTACTGCATAAAAGGAGATGAAAATATTTTACTCTATGAATACATGCCAAATAAGAGCTTGGACTCATTTATATTTGACCGTAGTCGAACTATACTCTTGGATTGGCCAATGCGGTTTGAGATAATTGTAGGCATTGCACGAGGCATGCTATACCTTCATCAAGACTCTAGATTGAGAGTGATTCATAGAGACCTGAAAACCAGCAACGTTCTCTTAGATCAGGAAATGAATCCAAAGATATCAGACTTTGGTCTTGCCAAAATATTTGGAGGAAAAGAAACCGAAGCAAGTACAGAGAGAGTGATGGGAACCTACGGATACATGGCTCCAGAGTATGCTTTGGATGGACTTTTTTCAGTGAAATCTGATGTTTTCAGCTTTGGGGTGGTTCTGTTGGAGATTCTTAGCGGAAAAAGGAACACAGGATTCTATGAGTCCAAACAAATTTCCAGCCTTTTGGGTTATGCATGGAAGTTATGGTCAGAGAAGAAGTTACTTGATATAATGGATCCTAGCCTTGGTGAAACATGCAACGAAAATCAATTCTTCAAGTGTGCCGTTGTTGGGCTATTATGCATACAAGATGAACCAAGTGATCGACCCACTATGTCAAATGTTTTGTACATGCTTGATATAGAGACAACAAGCATGCCAATTCCCACACAGCCAACATTTTTTATGAACAAGCGTTATTCTGGTTCAGCTTCTTCTTCTAGCAAACCAGAAACAAGTCTGAAATTTGACAGCAGTTACGAACAAGGTCGATAG 3012 0.42 MRSEGVVLSFSLLLLWLPLCFQICLGGDTLKVNQNITQDSSEGNLVSSNATFELGFFSPSGMENGEKRYLGIWYHGLEPQTVVWVANRDDPVADSSGVFRIAEDGNLVVEDAFKTRWSSELGASSSSNRTLQLLDSGNLVLKEDDSETTYLWESFQNPTDTFLPGMKMDASLSLTCWRDSANPAPGNFTFKLTQQAETRSFVVQSRSQIYWTLAELDLDNTEAASQVVFNLLNNDIWNTKTYNYSNKTLFVSQPYTYNKSRLLMNYSGEIVFLKWDEKELQWNKKWSGPESKCDMYDYCGSFSLCNKDNSIPCRCFPGFSSIHVSRSDGEWKSKGCVRKSASCTNNDVMFLNFTNIKVDDPDQEIDTQTEAECQSWCINMCPQSQCQAYSFNTSTFRDSNSYSCNIWTRPLTSLVENYPRGRDLSILVKTSDIAPTAKSCEPCGIYAIPYPLSTGANCGDPTYNNFNCDKSTGKVSFMIPGGRSYPVTWIDEDTRMFLIKTDYFYLFNSSFSSQNRTDFPFNIAEYIEDSVIKMNWLPAPEPPCSKLTDCMNWPNSTCRATGEGGSRCRCDSNYNWNDTLISCTQVLFHSVTEELSGNHSTRLELILLPTLGTLAAVTCIIAFGIVWRKKKARKLDGASTRIQESLYESERHVKGLIGLGSLEEKDIEGIEVPFYTFASILAATDNFSDSNKLGRGGYGPVYKGTFPGGQEIAVKRLSSVSTQGLQEFKNEVILIAKLQHRNLVRLRGYCIKGDENILLYEYMPNKSLDSFIFDRSRTILLDWPMRFEIIVGIARGMLYLHQDSRLRVIHRDLKTSNVLLDQEMNPKISDFGLAKIFGGKETEASTERVMGTYGYMAPEYALDGLFSVKSDVFSFGVVLLEILSGKRNTGFYESKQISSLLGYAWKLWSEKKLLDIMDPSLGETCNENQFFKCAVVGLLCIQDEPSDRPTMSNVLYMLDIETTSMPIPTQPTFFMNKRYSGSASSSSKPETSLKFDSSYEQGR 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03032 1003 ProSiteProfiles PAN/Apple domain profile. 343 431 IPR003609 -
Viun5g03032 1003 Gene3D - 23 156 IPR036426 -
Viun5g03032 1003 Gene3D Phosphorylase Kinase; domain 1 661 762 - -
Viun5g03032 1003 CDD STKc_IRAK 693 959 - -
Viun5g03032 1003 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 763 966 - -
Viun5g03032 1003 SUPERFAMILY alpha-D-mannose-specific plant lectins 82 174 IPR036426 -
Viun5g03032 1003 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 654 762 - -
Viun5g03032 1003 Pfam S-locus glycoprotein domain 251 320 IPR000858 GO:0048544
Viun5g03032 1003 CDD B_lectin 40 158 IPR001480 -
Viun5g03032 1003 SMART blect_4 37 158 IPR001480 -
Viun5g03032 1003 SMART serkin_6 687 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03032 1003 ProSiteProfiles Protein kinase domain profile. 687 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03032 1003 ProSiteProfiles Bulb-type lectin domain profile. 37 154 IPR001480 -
Viun5g03032 1003 SMART ntp_6 345 428 IPR003609 -
Viun5g03032 1003 Pfam Protein tyrosine and serine/threonine kinase 690 955 IPR001245 GO:0004672|GO:0006468
Viun5g03032 1003 SUPERFAMILY Protein kinase-like (PK-like) 670 958 IPR011009 -
Viun5g03032 1003 MobiDBLite consensus disorder prediction 980 1003 - -
Viun5g03032 1003 Pfam D-mannose binding lectin 81 171 IPR001480 -
Viun5g03032 1003 ProSitePatterns Serine/Threonine protein kinases active-site signature. 808 820 IPR008271 GO:0004672|GO:0006468
Viun5g03032 1003 Gene3D Transferase(Phosphotransferase) domain 1 763 966 - -
Viun5g03032 1003 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 119 982 - -
Viun5g03032 1003 FunFam Receptor-like serine/threonine-protein kinase SD1-8 22 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03032 Viun-Chr5 41489545 41493562 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03032 677 1000 Receptor kinase-like Gene Family AT4G23140 53.939 5.59e-124 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun5g03032 PK_Tyr_Ser-Thr 2.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03032 - - vun:114185132 2030.37