Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03030 ATGAGAAGTGAAGAGGTTGTGTTGTCGTTCTCCTTTCTTTTTCTCTGGCTGTCGATATGCTTCGAAATATGTTATGGAAGAGATACTCTGAAGGTTAACCAGAAGATAACCCAGGACTCCGAAGGAAACCTTTTTTCATCAAACGCCACATTTGAGCTGGGCTTCTTCTCTCCCGGTGAGGAAAGTGGAGAGAAAAGATACCTGGGGATATGGTATCACGGCTTGGAACCACAAACAGTGGTGTGGGTTGCCAACAGAGATCATCCCGTTGCAGATTCCAGTGGAGTTTTTCGAATTGCGGAGGATGGAAATCTCGTGGTAGAAGATGCATCATCCAAAACCCACTGGTCCTCCAAACTTGAAGCTAACTCGTCCGCCAACAAAACACTGAAGCTCCTAGATTCGGGGAATCTAGTACTAATACAGGATGACTCTGAAACCACATATCTGTGGCAAAGCTTCCAAAACCCAACAGACACGTTTCTTCCCGGCATGAAAATGGATGCGACTTTGTCGTTGACTTCTTGGAGAGACTCCGCTGACCCAGCACCTGGGAACTTCACTTTCAAAATGACTCAAAAGGCTGAGAAACAACGCTTCGTTGTGCAATATCATTCACACATCTACTGGGCACCTTATGAACTTGGCACAGAAGCGGCTTCCCAGAAGGTATTTGATTTGTTGCACAACACCACCTGGAATAGTACAACGTACAAATATTCTAACAAAACAGTCTTCGTATCAAAGCCTTACATGTACAATAAGTCAAGGCTGGTAATGAGTTATAGCGGGGAGATAGTGTTTCTGAAGTGGGACGAGAAACCATTACAATGGAATAAGAAATGGTTTGGACCAGAGGACAAGTGTGACATATATGATTATTGCGGGAGCTTCGGCATATGTAACAGAGATAACCTTCGGTGCAAATGTTTGCCAGGATTCAGTTCTGTTCAAGGTTTGCATTCTGATCGAGAATCGGAGTCCCAAGGATGTGAGAGAAAATCAAAGCCGTGTAACAGTACGAACGAGGACGTGTGGTTCCTGAACTTAACCAATATAAAAGTGGGGAACTCAGACCAAGAAATTTATACTCAAACAGAAGCAGAATGTCAATCCATGTGCATCAACATGTGTCCCGAACCACAGTGCCAGGCATATTCATTTAATACTTCTACGTATGGTGACCGTAGTTCATACTCCTGCTATATCTGGACGGAGCCTTTAACTTCTCTTGTTGAGAACAACCCGCGCGGTCGTGATCTTTCTATCTTGGTTAAGAAATCAGACATAGCACCAACTGCTAAATCCTGTGAACCTTGCGGCACATATGCGATTCCTTATCCCCTGAGCACTGGGCCAAACTGCGGCGACCCCATGTACCACAACTTCAATTGCAACAAATCCTCCGGCATAGTTAGCTTCATGATGCCCGGAGGAAAATCATACCCAGTTACTTGGATTGATGAAGCTACCAGAATTTTTTCCATTCAAACAGGCGAATTCTATGCTTTTAATTCCATTTTCAGCAATCAAAATAGCACTGATTTTCCGTTTACTAGAACCGAGTTCTTTGAAGATACCGAAGTAATAATCACTTGGCTACCTCCGCGAGAACCGCCGTGTACTACGCTTATAGATTGCATGAATTGGCCACATTCGACATGCAGAACAGGGGAAGGTGCAAGTAGGTGCTATTGTGATTCAAACTATAATTGGAATAAAACAATTATGAGCTGCACCCGAGAAGAACCATCAGGAAAAATGGAATTGATTCTTTTAGCTACTCTTTGTTCTCTGGCTGCTATGACATGCATCATAGCATTTGGCATTGTGTGGAGAAAGAAAAAAACCCGTAAACTTGATGGAGCAAGCACCCGAATTCAGGAGAGCTTGTATGAGAGTGAAAGACACGTGAAAGGTTTGATTGGCTTAGGAAGTTTAGAAGAAAAAGACATCGAAGGCATTGAAGTGCCTTTTTACACTTTTGCAAGCATTCTCGCAGCTACCGATAATTTCTCAGATTCTAACAAGCTTGGAAGAGGAGGTTACGGACCTGTTTATAAGGGAACTTTTCCTGGAGGTCAAGAAATAGCTGTGAAGAGACTTTCAAGTGTTTCCACTCAAGGCCTGCAAGAATTCAAGAATGAGGTTATTTTGATTGCCAAACTTCAACATCGGAACCTTGTTAGACTGAGGGGCTACTGCATAAAAGGAGATGAAAAAATTTTACTCTATGAATACATGCCAAATAAGAGCTTGGACTCATTTATATTTGACCGTAGTCGAACTATACTCTTGGATTGGCCAATGCGGTTTGAGATAATTGTAGGCATTGCACGAGGCATGCTATACCTTCATCAAGACTCTAGATTGAGAGTGATTCATAGAGACCTGAAAACCAGCAACGTTCTCCTTGACGAGGAAATGAATCCAAAGATATCAGACTTTGGTCTTGCCAAAATATTTGGAGGAAAAGAAACCGAAGCAAGTACAGAGAGAGTGATGGGAACCTACGGATACATGGCTCCAGAGTATGCTTTGGATGGACTTTTTTCAGTGAAATCTGATGTTTTCAGCTTTGGGGTGGTTCTGTTGGAGATTCTTAGCGGAAAAAGGAACACAGGATTCTATGAGTCCAAACAAATTTCCAGCCTTTTGGGTTATGCATGGAAGTTATGGTCAGAGAAGAAGTTACTTGATTTAATGGATCCTAGCCTTGGTGAAACATGCAACGAAAATCAATTCTTCAAGTGTGCAGTTGTTGGGCTACTATGCATACAAGATGAACCAAGTGATCGACCAACTATGTCAAATGTTTTGTACATGCTTGACACAGAGACAACAAGCATGCCAATTCCCACACAGCCAACATTTTTTATGAACAAGCGTTATTCTAGCTTAGCTTTGTCTTCTAGCAAACCAGCGACAAGTCTGCAATTTGACAGCAGTTATAATCATGGCCGATAA 2967 0.425 MRSEEVVLSFSFLFLWLSICFEICYGRDTLKVNQKITQDSEGNLFSSNATFELGFFSPGEESGEKRYLGIWYHGLEPQTVVWVANRDHPVADSSGVFRIAEDGNLVVEDASSKTHWSSKLEANSSANKTLKLLDSGNLVLIQDDSETTYLWQSFQNPTDTFLPGMKMDATLSLTSWRDSADPAPGNFTFKMTQKAEKQRFVVQYHSHIYWAPYELGTEAASQKVFDLLHNTTWNSTTYKYSNKTVFVSKPYMYNKSRLVMSYSGEIVFLKWDEKPLQWNKKWFGPEDKCDIYDYCGSFGICNRDNLRCKCLPGFSSVQGLHSDRESESQGCERKSKPCNSTNEDVWFLNLTNIKVGNSDQEIYTQTEAECQSMCINMCPEPQCQAYSFNTSTYGDRSSYSCYIWTEPLTSLVENNPRGRDLSILVKKSDIAPTAKSCEPCGTYAIPYPLSTGPNCGDPMYHNFNCNKSSGIVSFMMPGGKSYPVTWIDEATRIFSIQTGEFYAFNSIFSNQNSTDFPFTRTEFFEDTEVIITWLPPREPPCTTLIDCMNWPHSTCRTGEGASRCYCDSNYNWNKTIMSCTREEPSGKMELILLATLCSLAAMTCIIAFGIVWRKKKTRKLDGASTRIQESLYESERHVKGLIGLGSLEEKDIEGIEVPFYTFASILAATDNFSDSNKLGRGGYGPVYKGTFPGGQEIAVKRLSSVSTQGLQEFKNEVILIAKLQHRNLVRLRGYCIKGDEKILLYEYMPNKSLDSFIFDRSRTILLDWPMRFEIIVGIARGMLYLHQDSRLRVIHRDLKTSNVLLDEEMNPKISDFGLAKIFGGKETEASTERVMGTYGYMAPEYALDGLFSVKSDVFSFGVVLLEILSGKRNTGFYESKQISSLLGYAWKLWSEKKLLDLMDPSLGETCNENQFFKCAVVGLLCIQDEPSDRPTMSNVLYMLDTETTSMPIPTQPTFFMNKRYSSLALSSSKPATSLQFDSSYNHGR 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03030 988 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 748 951 - -
Viun5g03030 988 CDD PAN_AP_plant 338 425 - -
Viun5g03030 988 Pfam D-mannose binding lectin 79 170 IPR001480 -
Viun5g03030 988 SMART serkin_6 672 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03030 988 SMART blect_4 29 157 IPR001480 -
Viun5g03030 988 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 639 747 - -
Viun5g03030 988 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 116 966 - -
Viun5g03030 988 Gene3D Transferase(Phosphotransferase) domain 1 748 953 - -
Viun5g03030 988 Gene3D Phosphorylase Kinase; domain 1 646 747 - -
Viun5g03030 988 Gene3D - 23 155 IPR036426 -
Viun5g03030 988 ProSiteProfiles PAN/Apple domain profile. 338 428 IPR003609 -
Viun5g03030 988 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 181 IPR036426 -
Viun5g03030 988 SUPERFAMILY Protein kinase-like (PK-like) 657 977 IPR011009 -
Viun5g03030 988 Pfam S-locus glycoprotein domain 233 316 IPR000858 GO:0048544
Viun5g03030 988 ProSitePatterns Serine/Threonine protein kinases active-site signature. 793 805 IPR008271 GO:0004672|GO:0006468
Viun5g03030 988 CDD B_lectin 44 157 IPR001480 -
Viun5g03030 988 FunFam Receptor-like serine/threonine-protein kinase SD1-8 22 154 - -
Viun5g03030 988 SMART ntp_6 342 425 IPR003609 -
Viun5g03030 988 ProSiteProfiles Bulb-type lectin domain profile. 29 153 IPR001480 -
Viun5g03030 988 CDD STKc_IRAK 678 944 - -
Viun5g03030 988 Pfam PAN-like domain 346 410 IPR003609 -
Viun5g03030 988 ProSiteProfiles Protein kinase domain profile. 672 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g03030 988 Pfam Protein tyrosine and serine/threonine kinase 675 940 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03030 Viun-Chr5 41466315 41470594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03030 662 985 Receptor kinase-like Gene Family AT4G23140 54.545 4.49e-126 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun5g03030 PK_Tyr_Ser-Thr 2.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03030 - - vun:114184726 1736.85