Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03028 ATGAAGAACTGCGAGCTGTGCAAGGTTCCGGCCCGGACCTTCTGCGAGTCGGACCAGGCCAGCTTATGCTGGGACTGCGACGCCAAGGTCCACGGTGCCAACTTCCTCGTCGCCAGACACACGCGCACGCTCCTCTGCCACACCTGCCAGTCACCCACGCCCTGGAAGGCCTCCGGCGCCGCCCTCGGCAACACCGTCTCCCTCTGCGAGAGGTGCGCCGGCGGAACCGCAGAACAAGGTCAGGAGAGCCAAGGAGGCAATGACGACGACTTAGAAACAGACGAAGATGACTACGACGACGATGATGAGACCGACGACGAGGTCGCCGCCGACGAAGACGGAGACAACCAGGTTGTCCCCTGGTCCTCCGCGCCGCCGCCACCTGCCCCGAGCTCTTCCAGCAGCGAAGAGTCGGTGTGCCGGTGCAACAACGCCTACGAGGACGTTTCGACCACATTGAAACGACGTCGTGAGGACAATGATTTCGAGTGTTCGAATTCGAACAATTGGGGATGTCAACTGAGCGAAGTGGAGAGAGGAGGCTGGTTGATTCGGTTGCGGCGGCGAACCGCCGCGGAAGATGACGGTCTTGCTGTTGAGCGACGGAGTAGTAGAGCGGTGGCTCCCTACGGTTGCGGTGATGATGATAGAGCCTCTGAAGACGTTTGA 669 0.6099 MKNCELCKVPARTFCESDQASLCWDCDAKVHGANFLVARHTRTLLCHTCQSPTPWKASGAALGNTVSLCERCAGGTAEQGQESQGGNDDDLETDEDDYDDDDETDDEVAADEDGDNQVVPWSSAPPPPAPSSSSSEESVCRCNNAYEDVSTTLKRRREDNDFECSNSNNWGCQLSEVERGGWLIRLRRRTAAEDDGLAVERRSSRAVAPYGCGDDDRASEDV 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03028 222 SMART bboxneu5 1 45 IPR000315 GO:0008270
Viun5g03028 222 Pfam B-box zinc finger 2 43 IPR000315 GO:0008270
Viun5g03028 222 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Viun5g03028 222 MobiDBLite consensus disorder prediction 192 222 - -
Viun5g03028 222 MobiDBLite consensus disorder prediction 77 140 - -
Viun5g03028 222 CDD Bbox1_BBX-like 4 45 - -
Viun5g03028 222 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 177 - -
Viun5g03028 222 MobiDBLite consensus disorder prediction 85 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03028 Viun-Chr5 41426717 41428090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03028 2 128 C2C2-CO-like Transcription Factor Family AT5G54470 51.880 8.92e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun5g03028 zf-B_box 9.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03028 - - gmx:100801024 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03028 5 41426717 41428090 Viun5g03028 5 41426717 41428090 ECH
Viun5g03028 5 41426717 41428090 Viun11g01528 11 31508376 31509552 PCT