Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03014 ATGGTGAAAAACACTAATTCTGAAAAAAGTGGCCTTAGGAAAGGAACATGGACCCCAGAGGAAGATAAAAAATTGATCGCTTATGTTACCAGATACGGTCACTGGAATTGGAACCTACTCCCCCAGTTTGCAGGTCTTGAGAGGTGTGGAAAAAGTTGCAGGCTAAGGTGGCTGAATTACTTAAGACCAAATATCAAAAGAGGAAACTACACTAAAGAAGAAGAGGAAACCATTATCAAACTTCTCCAAAGTCTCGGTAACAGATGGTCTGCCATAGCTGCTCAGTTGCCAGGAAGAACAGACAATGAAATAAAGAATTATTGGCACACCAATCTCAAGAAACGATATCAACCTCTCAAACCTCAAGTTTCCCACTCAAAGGATCAATCACAACCTGAACAAGTACCAAACCCTAGCAATAATACTGCACCAACTTCTCAGTCCACCGATTCATGCACAGCATCATCATCATCAACATCAACATCAACATCCTCGTCCCTACTCTCTATAACTACTGGTACCAAAGAAAAAAAGTTTGATACAATTTCTGAGGATGACGATTTTTCGTTTGTGGATGCATACCAACTAGAGCCTGTGAACGAAAGCTTCTTGTTGGAACCATATATGGTTGACACATCGTGCCTTTCTTCTGATATTTTGGTGCCTGAACCCGATTACTTCAGCCCTGTTTCTGACATAGAACTTTGGAGTCACAGTAATGAATACTATGCGTGA 735 0.4095 MVKNTNSEKSGLRKGTWTPEEDKKLIAYVTRYGHWNWNLLPQFAGLERCGKSCRLRWLNYLRPNIKRGNYTKEEEETIIKLLQSLGNRWSAIAAQLPGRTDNEIKNYWHTNLKKRYQPLKPQVSHSKDQSQPEQVPNPSNNTAPTSQSTDSCTASSSSTSTSTSSSLLSITTGTKEKKFDTISEDDDFSFVDAYQLEPVNESFLLEPYMVDTSCLSSDILVPEPDYFSPVSDIELWSHSNEYYA 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03014 244 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 180 - -
Viun5g03014 244 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun5g03014 244 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Viun5g03014 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun5g03014 244 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun5g03014 244 CDD SANT 69 112 IPR001005 -
Viun5g03014 244 Gene3D - 68 145 - -
Viun5g03014 244 FunFam MYB-related transcription factor 13 66 - -
Viun5g03014 244 CDD SANT 16 61 IPR001005 -
Viun5g03014 244 SMART sant 66 114 IPR001005 -
Viun5g03014 244 SMART sant 13 63 IPR001005 -
Viun5g03014 244 Gene3D - 14 66 - -
Viun5g03014 244 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun5g03014 244 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Viun5g03014 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun5g03014 244 MobiDBLite consensus disorder prediction 122 167 - -
Viun5g03014 244 MobiDBLite consensus disorder prediction 119 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03014 Viun-Chr5 41348932 41353098 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03014 8 213 MYB Transcription Factor Family AT2G31180 48.544 6.44e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun5g03014 Myb_DNA-binding 5.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03014 K09422 - gmx:100810385 310.071