Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03013 ATGGTGAGAACCCCTTGTTGCGACAAAGATGGACTCAAGAAAGGATCATGGACACAGGAGGAAGACAACAAGTTGATCGCTTATGTCACCAGGTATGGTCACTGGAATTGGCGCCTGCTCCCCAAGTTTGCAGGTCTTGCAAGGTGTGGGAAGAGTTGCAGACTGAGATGGCTGAACTATCTAAGGCCAGATGTGAAAAGAGGGAATTTTAGTGACGAGGAAGAAGAAACCATTGTGAGACTTCACGAAAAGCTCGGTAATAGGTGGTCAACAATTGCTGCTGAATTGCCAGGGAGGACTGATAACGAGATAAAAAACCACTGGCACACCGTCCTCAAGAAGCGATTTCAACAAAAACCTGTGGCCAAACGCGGAAATGAAAAAGAAGCCGCTATTTCCAAATCAATGGAGACCTTATACAGTGACCACAACACAACAAGTGATGCTTCTGCTGCTGCTGCTGCTTCTGCTGCAGCAGCAACCGCCACAAATCATCAAAGTTATGATGATCTTTCTGTCTTGGATGCATACACGGAGCCTGTGTCTGCAGATTTCTGGACAGAACCTTATTTACTTGACAACTCCTATGTCCCACCCGAGTCTGAACCTGTTTACCTCAGTCCTATGTACGATGTACAACTTTGGAACCAGAATGAGCTGTTCCTGCAGGAATGTGAGGGTTTTTTCCAATGGTGA 696 0.4626 MVRTPCCDKDGLKKGSWTQEEDNKLIAYVTRYGHWNWRLLPKFAGLARCGKSCRLRWLNYLRPDVKRGNFSDEEEETIVRLHEKLGNRWSTIAAELPGRTDNEIKNHWHTVLKKRFQQKPVAKRGNEKEAAISKSMETLYSDHNTTSDASAAAAASAAAATATNHQSYDDLSVLDAYTEPVSADFWTEPYLLDNSYVPPESEPVYLSPMYDVQLWNQNELFLQECEGFFQW 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03013 231 FunFam MYB-related transcription factor 13 66 - -
Viun5g03013 231 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun5g03013 231 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Viun5g03013 231 CDD SANT 69 112 IPR001005 -
Viun5g03013 231 Gene3D - 13 66 - -
Viun5g03013 231 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun5g03013 231 CDD SANT 16 61 IPR001005 -
Viun5g03013 231 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 161 - -
Viun5g03013 231 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun5g03013 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun5g03013 231 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Viun5g03013 231 SMART sant 66 114 IPR001005 -
Viun5g03013 231 SMART sant 13 63 IPR001005 -
Viun5g03013 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun5g03013 231 Gene3D - 69 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03013 Viun-Chr5 41320238 41323208 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03013 1 195 MYB Transcription Factor Family AT2G31180 50.254 1.57e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun5g03013 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03013 K09422 - gmx:100815765 323.168