Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03009 ATGGATTTTAACCTCGAAAACCCTCTTGGAAACTTCCACGACCTTCCCTCTGAAGCTCTTCCTTCACTCTTCCTCATCGAATCCGACCACATCCCTCCACCCAATTACTGTCAAACTCTCAAAGCCAGCGACTTCGACATCTCTGTTAGGAGAAATGTTGTCTCTTTGATTTCACAGCTCTCCTGCACTTTCGATCCAGTTCTTCCTTACCTTGCCATCAACTACTTGGATCGCTTCCTCGCTAACCAAGGAATATTGCAACCAAAGCCATGGGCAAACAAGCTTCTTGCAGTATCTTGCTTTTCTTTAGCGGCCAAGATGTTGAAAGCAGAGTACTCTGCCACTGATGTCCAGGTTCTTCTGAATCATGGTGATGGAGGTGTCATCTTCGAGACACAAACAGTTCAAAGAATGGAGGGAATTATCTTGGGGGCACTCCAATGGCGAATGCGTTCCATCACCCCGTTCTCTTTCATTCCCTTCTTCGTGAACTTGTTCAGGCTCAAAGACCCGGCATTTAGACAGGTTCTGAAGGATCGAGCATCCGAAATCATACTGAAGTCACAAAGAGAGATAAAGGTGTTGGAATTCAAGCCATCTGTAGTTGCTGCGTCAGCCCTTCTGTATGCTTCACATGAGTTGTTTCCCTTTCAATATCCATGCTTCTTAGGAGCAATATCCGACTGTTCATATGTTAACAAAGAAACTGTGGTGCAATGTTATAATGTGATAGAGGACATAGCCAGGGAGGAGTACGAATCTGTGTTGAATGTAAATTCAACTTCAGACACCCCGGTTAATGTGTTAGACGAACATTTTCTAAGCTTGGAAAGTGAAAAAACCAACGGCGTCATACAAGAGCAGGAGTTCAAAAGAAGGAAAATTACCGATTATGGCAACAAACGCACTGTCCCGTTTTCTCATTTTCATCAATGCTGA 939 0.4409 MDFNLENPLGNFHDLPSEALPSLFLIESDHIPPPNYCQTLKASDFDISVRRNVVSLISQLSCTFDPVLPYLAINYLDRFLANQGILQPKPWANKLLAVSCFSLAAKMLKAEYSATDVQVLLNHGDGGVIFETQTVQRMEGIILGALQWRMRSITPFSFIPFFVNLFRLKDPAFRQVLKDRASEIILKSQREIKVLEFKPSVVAASALLYASHELFPFQYPCFLGAISDCSYVNKETVVQCYNVIEDIAREEYESVLNVNSTSDTPVNVLDEHFLSLESEKTNGVIQEQEFKRRKITDYGNKRTVPFSHFHQC 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03009 312 CDD CYCLIN_AtCycD-like_rpt2 153 244 - -
Viun5g03009 312 FunFam D6-type cyclin 149 242 - -
Viun5g03009 312 SUPERFAMILY Cyclin-like 134 249 IPR036915 -
Viun5g03009 312 Gene3D - 33 151 - -
Viun5g03009 312 Gene3D - 22 242 - -
Viun5g03009 312 Pfam Cyclin, C-terminal domain 153 251 IPR004367 -
Viun5g03009 312 FunFam D6-type cyclin 33 148 - -
Viun5g03009 312 SUPERFAMILY Cyclin-like 13 150 IPR036915 -
Viun5g03009 312 PANTHER CYCLINS 32 253 IPR039361 -
Viun5g03009 312 SMART Cyclin_C_2 153 268 IPR004367 -
Viun5g03009 312 Pfam Cyclin, N-terminal domain 27 150 IPR006671 -
Viun5g03009 312 SMART cyclin_7 157 246 IPR013763 -
Viun5g03009 312 SMART cyclin_7 51 144 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03009 Viun-Chr5 41268834 41271066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03009 1 296 Core Cell Cycle Gene Families AT4G03270 45.806 1.29e-81 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03009 K18812 - gmx:100799951 585.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03009 5 41268834 41271066 Viun5g03009 5 41268834 41271066 ECH
Viun5g03009 5 41268834 41271066 Viun11g01513 11 31279698 31282325 PCT