Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02999 ATGGGAAGAGCACCTTGTTGCAACAAAAATGGTCTCAAAAAGGGTCCTTGGACACCTGAAGAGGATCTCATGCTCACCAACTACATTCACACTCATGGACCTGGAAATTGGCGAACCCTCCCCAAGAATGCTGGTTTACAACGATGTGGCAAGAGTTGCCGTCTTCGATGGACCAATTACCTGAGACCCGATATCAAGAGAGGAAGGTTCTCGTTTGAAGAAGAAGAGACAATCATTCAGCTCCACAGTGTCTTGGGAAACAAGTGGTCGGCGATAGCAGCTAGGTTGCCAGGGAGAACCGACAATGAAATAAAGAACTATTGGAACACCCACATCAGGAAGAGGTTGCTGCGAATGGGAATCGATCCTGTTACACACGCTCCACGCCTCGATCTTCTTGACATGTCCTCGATTCTGAGGTCAGCAATCGGCAACGTTAATCCATCGTTTCTGAATCTGCAAGGCTTGTTGAGCGCCCAGGCGTTGATGAACCCAGAGTTTCTGAAGCTCGCCGCCACTGCAACTTTGTTATCATTGAAGAATGATCACAATCAAAACCCGTCAAATTTAGTCTCACAAGCTCAACAACAATTGAATAACGTAGGGAATTGTCCAGTGCAAAGCCAGATTTTCCCTAATCAGTTTCAGACTCCAACTCAAAGCAACAACGTGAACAATGGGCTTTCAATGTCCCCAGACAATTATCTCGGTGTGCATAGTTACCTGAACGCTCAACAAAACCAAGTTGATTTGTTACAGGACCCGGATTTGGTACATTTGTTAAACAGTGCAAACCAAAACATGGGCTATGAATCGGTTCTCTCTACGCCTTTGTCTACCCCAACTCCATTGAATTCATCATCCACTTATGTGAATAGCAGCACCGAGGAAGAGAGGGACACGTATTGCAGCGATGTATTCAAGTTAGAAATTCCGGAGAGTTTGGACATTAGCGATTTCTTGTAA 966 0.4545 MGRAPCCNKNGLKKGPWTPEEDLMLTNYIHTHGPGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSVLGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHAPRLDLLDMSSILRSAIGNVNPSFLNLQGLLSAQALMNPEFLKLAATATLLSLKNDHNQNPSNLVSQAQQQLNNVGNCPVQSQIFPNQFQTPTQSNNVNNGLSMSPDNYLGVHSYLNAQQNQVDLLQDPDLVHLLNSANQNMGYESVLSTPLSTPTPLNSSSTYVNSSTEEERDTYCSDVFKLEIPESLDISDFL 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02999 321 CDD SANT 69 112 IPR001005 -
Viun5g02999 321 Gene3D - 13 66 - -
Viun5g02999 321 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun5g02999 321 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun5g02999 321 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Viun5g02999 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun5g02999 321 CDD SANT 16 61 IPR001005 -
Viun5g02999 321 FunFam MYB-related transcription factor 13 66 - -
Viun5g02999 321 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Viun5g02999 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun5g02999 321 FunFam Transcription factor MYB39 69 130 - -
Viun5g02999 321 MobiDBLite consensus disorder prediction 273 297 - -
Viun5g02999 321 Gene3D - 69 116 - -
Viun5g02999 321 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun5g02999 321 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 263 - -
Viun5g02999 321 SMART sant 66 114 IPR001005 -
Viun5g02999 321 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02999 Viun-Chr5 41223700 41225147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02999 1 321 MYB Transcription Factor Family AT4G21440 48.760 1.46e-101 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun5g02999 Myb_DNA-binding 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02999 K09422 - gmx:100812189 511.916