Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02998 ATGGCAATTCTTAAAGAGCAAAAACTTGTTCAAAAATGTAAGATTGGTCCAACAATGGGATCAACTTCTTCTGTTCCTCTCTCGTTCCTTGATTTGCCTTTAGCAGGTCCTATTTATGTCAGACGCCAATTCTTCTTCCACTTCCCCCATTCCACACTCCATTTCTCTCAAACTACACTTCCTTCTCTCAAAACCTCTCTCTCTCAAACCCTTCAACTCTTCTTCCCTCTCGCCGGAAACCTCCTTTGTCCTCCACCGCCGCACAAACCCTTCATTCGCTGCACCCATGATGACTCTGTCCCCTTCACTATCATCGAGTCCAAAGCTGATTTCAACCACCTCTCGTCAAACCACCCCAAAAGTCTCAAACACTTGGAACACTTGATTCCCAAGTTAGCATGCACAAACACACACGATGACACGTTTGTGTTCCCTTTGCTGGCATTGCAAGCCACGGTTTTTCCCAACCAGGGCCTCTGCGTCGCGATCACCTATTGCCACGTGATGGATGATGGTTGTTGCAGCAGTTTCATGAAGTCTTGGGCTTCCTTTTGTCGAAGTGGTGGCGTTGACTTGACTCTTGCAGAGAAGTCAACACCGTGCTTGGACAGGGGAGTGTTGAAGGACCCCAAAGGGTTAGAAGCTATCTTCTTAAGAGATTATTTTGAAGAGAGGTCAACTTGGAAGGAAAAGCTCGCTGGGAAAACCTCTGCGGTTTGCAATGCTGAAGATTACGTCAAAGCAACGATTGTTTTGGGAAGGGATGATATCGAGAGGCTGAGAAGATTGGTGTTGAATCATTGGAAGAGAAGTGAAGAAGAATTCAACACGTCACAGCATGTATCGAAATTTGTGGTGGCTTGTGCCTTTGTGTGGGTTTGTTTGGTTAAAACAAGACACAGAAGTGATTATGAAGAGGAAGATAAAGAAGAGTACTTTCGTTTCGCTGCAGATTGCAGAGATCGGCTTGAGCCTCCTGTGCCAGAAACATACTTTGGAAACTGCTTAACGTTATGTTTTGCAATGCTGAAGAGAAAGGAGCTTATGGGAGAAGGTGGTTTTGTGAATGCAGTGAATGTTATGAGAAGGGCAGTGAGTGATGTGAAAAGTGATTTGTTTAAGGATGCAGAAAAGTGGAGGGAAACATTTACGAGGATGTTTGCGTTGGGAAGTACTTTGATAGTTACTGGGTCACCCAAGTTCACTGTTTATGAGACTGATTTTGGATTTGGAAAGCCTAAGAAAGTGGAAATGGTACATTCCATGAAGGGTGTGTCATTAGCAGAGAGTGGAGAAAAGGAAGGAGGAGTTGAAGTTGGCTTGGTGTGTACAGTCACAGAATTTGAATATTTAGTTTCTGTCGTTGAGCAAGAACTTCAAGGTTCAAAATCCTAA 1395 0.4416 MAILKEQKLVQKCKIGPTMGSTSSVPLSFLDLPLAGPIYVRRQFFFHFPHSTLHFSQTTLPSLKTSLSQTLQLFFPLAGNLLCPPPPHKPFIRCTHDDSVPFTIIESKADFNHLSSNHPKSLKHLEHLIPKLACTNTHDDTFVFPLLALQATVFPNQGLCVAITYCHVMDDGCCSSFMKSWASFCRSGGVDLTLAEKSTPCLDRGVLKDPKGLEAIFLRDYFEERSTWKEKLAGKTSAVCNAEDYVKATIVLGRDDIERLRRLVLNHWKRSEEEFNTSQHVSKFVVACAFVWVCLVKTRHRSDYEEEDKEEYFRFAADCRDRLEPPVPETYFGNCLTLCFAMLKRKELMGEGGFVNAVNVMRRAVSDVKSDLFKDAEKWRETFTRMFALGSTLIVTGSPKFTVYETDFGFGKPKKVEMVHSMKGVSLAESGEKEGGVEVGLVCTVTEFEYLVSVVEQELQGSKS 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02998 464 PANTHER - 8 459 - -
Viun5g02998 464 Pfam Transferase family 23 450 - -
Viun5g02998 464 Gene3D - 242 461 IPR023213 -
Viun5g02998 464 Gene3D - 7 233 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02998 Viun-Chr5 41204698 41206227 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02998 45 413 Monolignol Biosynthesis Gene Families AT5G48930 23.711 1.16e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02998 - - pvu:PHAVU_005G109000g 790.801