Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02992 ATGGCTCACCGGAGAGAACTTGATTCAGTGAAGATCATAGAGCAGTGTCAAGTTTCTCCGCCACCAAATTCTGTTCCTTCAACCACTCTTCCCCTCACTTTCTTTGACATTCCATGGTTCTTCTGCAACTCCATCCAACGCATCTTCTTCTACGAGTTTCCCCACCCCACTCACCACTTCCTCCAAGAAGCACTTCCCATTCTCAAACACTCTCTTTCGCTCTCTCTCCAACATTTCTTCCCTTTTGCCTCCAATCTCATCGTTCCACCACAACTCCACCTCTCTCACATTCGTTACCTTCACGGCGACTCTCTCTCCTTCACCGTTGCAGAGTCCACAGCAGACTTCAATCTCCTCACGTCAGATTCTCCTCAAGACGTTCAAAACTGGCACCCTCTTGTTCCTACCTTGCCTTCCGCACGTGTTGAGCAGGATGGCATACGTGTGATGCCTCTCATGGCCATTCAGGTCACGCTTTTCCCAAACTCTGGCTTCAGCATATGTCTCACCTTCAACCACCTTGCTGGGGATGGCAAATCACTTCATCATTTCATCAAGTTTTGGGCTTCTCTTTGCAATGCGAGAGGGGAGTTCACTTCCATTGAGGCCTCTTTGTCTCTTCCTTCACACGAGAGAGACAAAGTTAAAGACCCAAAAGGGCTTAAGTTCATTTACTTTCAAGAACTTGAACATTTTGAGTCCAAAAGCATGGAGTTCGCTGGGCTCGTGCGAGATGTTTCCACTAACAAGCTGCGCTTCACTCTTGTACTCAGTCTTGAACAAGTTGAGAAACTAAAGAAATGGGTCTCTCTTAAATGTGCAAGCAACGATTCGGGGTTATTACACATATCAACCTTTGTTGTAGCATGCTCTATAATTTGGGTTTGCATGATTAGGTCGGAAGAAAAAAGAGCCATTTGTTTTTCAGAAGAGTGTGATGAACTTTGTCACTTGGTGTTTCTAGCAGATTGTCGCGATCGTCCTGAATTTTCATTACCTTCCACGTACTTTGGAAATTGTTTAACCGCTTACATTGTGGCAATAAAGAGGAATGAGCTGGTGGGAGAAGATGGGATCGTTGCTGCGGCAAATGCTATTGGAAAGGAAATTAGATATTTGAAGAGTGATCCTTTGAGAAATGCTGAAACGTTGATGTCAGATTATAGAGAGTTAGGAAAACCAGGTAAATCTGTGTTGGTTATTGCAGGTTCACCAAAATTGGGTGTATACCAGACTGATTTTGGTTGGGGAAAGCCTAAGAAATGTGAAGCAGCGCATATTGAATCGTCAGGATCCATTTCTCTTTCTGATTGCAGAGACGAAAAAGGAGGAATTGAGGTTGGATTAGCACTTGAAAGAACTCACATGAATAAGTTCTGCAACATCTTGGAAAAAGAACTCTATAATATTAATAAATCTTGA 1422 0.436 MAHRRELDSVKIIEQCQVSPPPNSVPSTTLPLTFFDIPWFFCNSIQRIFFYEFPHPTHHFLQEALPILKHSLSLSLQHFFPFASNLIVPPQLHLSHIRYLHGDSLSFTVAESTADFNLLTSDSPQDVQNWHPLVPTLPSARVEQDGIRVMPLMAIQVTLFPNSGFSICLTFNHLAGDGKSLHHFIKFWASLCNARGEFTSIEASLSLPSHERDKVKDPKGLKFIYFQELEHFESKSMEFAGLVRDVSTNKLRFTLVLSLEQVEKLKKWVSLKCASNDSGLLHISTFVVACSIIWVCMIRSEEKRAICFSEECDELCHLVFLADCRDRPEFSLPSTYFGNCLTAYIVAIKRNELVGEDGIVAAANAIGKEIRYLKSDPLRNAETLMSDYRELGKPGKSVLVIAGSPKLGVYQTDFGWGKPKKCEAAHIESSGSISLSDCRDEKGGIEVGLALERTHMNKFCNILEKELYNINKS 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02992 473 Gene3D - 9 241 IPR023213 -
Viun5g02992 473 Gene3D - 247 469 IPR023213 -
Viun5g02992 473 PANTHER - 9 467 - -
Viun5g02992 473 Pfam Transferase family 10 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02992 Viun-Chr5 41143821 41145500 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02992 37 470 Monolignol Biosynthesis Gene Families AT5G48930 26.154 1.33e-17 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02992 - - vra:106771201 771.155