Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02956 ATGGGTTGCTGTGTCTCAACAAGTAGTCATAGCACTCGTAGTAGCAGGAGCACTGCAGACAAAAACGTTCCGGCGTGTCTGGAAATAGGATTCTGTGGTCAAAAGAGTGCAAGGAGAACATTCTCGGACCATGTTGTCTCTCTGCACCAGTTACCATCTTTACCCAACAGAATTTTCAGCAATGGAAAGAGCAGGTCTTCTTGCATATTTACACAGCAGGGTCGTAAGGGGATTAATCAGGATGCCATGATTGTATGGGAAGATTTCATTTCAGAAGATGTTACCTTTTGTGGTGTCTTTGATGGCCACGGTCCACACGGTCACCTTGTTGCACGCAAAGTTCGGGAAGCCTTGCCACTCAAACTACTTTCATTTTTGCATTCCTCGGAATCAGGGCAAAATGGTTCAGGTAAAACTTGTTTCAGAGGAACCATGAAGCCTGAAAGTGCAGAATCTGAGAAAGATGTTGCTGCTGAAGAGAATCTGAATTCTATGTGGAGAGAAGCTTTCATGAAGGCATACAAGGCTATGGATAAAGAGCTGAGGTCTCATCCAAATTTGGACTGCTTCTGTAGTGGGAGCACAGCTGTCACTGTAGTGAAACAGGGTTCAAATTTGTTCATGGGCAATATTGGGGATTCCCGAGCAATCATGGGATCCAAGGACAGCAATGATGTCATGGTGGCAACTCAGTTGACCGTTGATTTGAAGCCTGATTTGCCAAGAGAAGCAGAAAGAATCAAACGATGCAAGGGTAGGGTATTTGCATTACAAGATGAGCCAGAAGTTCATAGGGTATGGTTGCCTTTTGATGATGCACCAGGATTAGCAATGGCTCGAGCATTTGGAGATTTTTGCTTGAAGGAATACGGTGTGATTTCTATACCTGAATTTTCTCATCGGTTACTAACAGACAAAGATCAGTTCATTGTTCTTGCCTCAGATGGGATTTGGGATGTTTTGAGCAACGAAGAGGTGGTCGGGATAGTATCTTCAGCACCAACTCGATCATCAGCAGCTAGGATTCTGGTGGATTCCGCGGCTCGAGAGTGGAAACTTAAGTATCCTACTTCAAAAGTGGATGACTGTGCTGTTGTGTGCCTTTTTCTGGATGGAAAAATGGATTCAGAATCTGACTGTGATGAGCAATGTTTTTCTTCTGCTATCATGCAGAGCAACGAGTCAAGCAATCTGGCTGAGACAGATGATGGACAAAAGTCTGAGCCAACTTTGCAACGGAACTTTACTGTGAGGTCCTCAAAAGAAAATGGAAGAGGAGGAGTATCTGTTGATGGTGTTGAAGATGGAACATCAGGGCCTGAAGATGAAAACTGGTTAGCTTTGGAGGGTGTGACCCGAGTAAACTCACTGGTTCAACTCCCTAGGTTTTCTGAGGAAAAGCCAAACTGTTGA 1413 0.4444 MGCCVSTSSHSTRSSRSTADKNVPACLEIGFCGQKSARRTFSDHVVSLHQLPSLPNRIFSNGKSRSSCIFTQQGRKGINQDAMIVWEDFISEDVTFCGVFDGHGPHGHLVARKVREALPLKLLSFLHSSESGQNGSGKTCFRGTMKPESAESEKDVAAEENLNSMWREAFMKAYKAMDKELRSHPNLDCFCSGSTAVTVVKQGSNLFMGNIGDSRAIMGSKDSNDVMVATQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVHRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRLLTDKDQFIVLASDGIWDVLSNEEVVGIVSSAPTRSSAARILVDSAAREWKLKYPTSKVDDCAVVCLFLDGKMDSESDCDEQCFSSAIMQSNESSNLAETDDGQKSEPTLQRNFTVRSSKENGRGGVSVDGVEDGTSGPEDENWLALEGVTRVNSLVQLPRFSEEKPNC 470
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02956 470 CDD PP2Cc 65 370 IPR001932 -
Viun5g02956 470 Pfam Protein phosphatase 2C 136 347 IPR001932 -
Viun5g02956 470 PANTHER PROTEIN PHOSPHATASE 63 368 IPR015655 GO:0004722|GO:0006470
Viun5g02956 470 SMART PP2C_4 55 368 IPR001932 -
Viun5g02956 470 MobiDBLite consensus disorder prediction 395 447 - -
Viun5g02956 470 FunFam probable protein phosphatase 2C 52 57 373 - -
Viun5g02956 470 SUPERFAMILY PP2C-like 57 372 IPR036457 -
Viun5g02956 470 Gene3D - 57 372 IPR036457 -
Viun5g02956 470 ProSiteProfiles PPM-type phosphatase domain profile. 66 370 IPR001932 -
Viun5g02956 470 MobiDBLite consensus disorder prediction 395 423 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Viun5g02956 Viun-Chr5 40905104 40909187 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02956 1 468 PP2C-type Phosphatase Gene Family AT1G03590 68.211 0.0 628
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02956 - - gmx:100777448 833.943
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g02956 5 40905104 40909187 Viun5g02956 5 40905104 40909187 ECH
Viun5g02956 5 40905104 40909187 Viun11g01463 11 30810878 30815810 PCT