Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02943 ATGCAGCGCCACCGTGTCTCCGCCGTGTTTATTCTAAGCTTGTGCTTTAACATTGCGCTAGGACAGACTCCTACTCACAGTGTCCTGGACCAACATTGGTACCCGGGAACCGCCACGTGGTACGGCGAACCCGAAGGAGACGGTAGCACCGGAGGGGCATGTGGGTATGGTACATTGGTGGACGTGAAGCCGTTGAAGGCAAGGGTGGGTGCAGTGGGGTCAATGCTGTTCAAGAAAGGAGAAGGTTGCGGGGCTTGTTATAAGGTGAAGTGTTTGGACCATAGCATATGTTCCAAGCGGGCAGTGACGGTTATAGTAACCGATGAGTGCCCGGGCTGCCCGTCTGACCGGACGCACTTCGACCTCAGTGGCTCCGCCTTCGGCCGCATGGCGTTCGCCGGTGAAAACGGTCAGCTCCGAAACCGAGGGGAAATCCCAGTCGTTTACCGAAGAACACCATGCAAGTATGCTGGGAAAAACATTGCCTTCCATGTGAACGAAGGTTCAACACCTTACTGGCTATCACTTCTTGTGGAGTTTGAAGATGGAGATGGTGACATAGGCTCCATGTATATACAAGAGTTTTCACATATCGCCATCTTCAACTGCCTAGGTACATTCACTTTTTCCTTTATTCTCATTCCTCTCTTGATCCTCCTTTATTCAACATTAGTTGCTCTATCTTTACATAGCTTCATTACTCTCTTCACATTGTATAACTTTACTTCCTCATTATGCTATTTCTGCTATTTTAAGACTTTCTACGTTTCACTCTTTTGGGGGTTTTCTATGTGTGTATTTTTTTAG 807 0.482 MQRHRVSAVFILSLCFNIALGQTPTHSVLDQHWYPGTATWYGEPEGDGSTGGACGYGTLVDVKPLKARVGAVGSMLFKKGEGCGACYKVKCLDHSICSKRAVTVIVTDECPGCPSDRTHFDLSGSAFGRMAFAGENGQLRNRGEIPVVYRRTPCKYAGKNIAFHVNEGSTPYWLSLLVEFEDGDGDIGSMYIQEFSHIAIFNCLGTFTFSFILIPLLILLYSTLVALSLHSFITLFTLYNFTSSLCYFCYFKTFYVSLFWGFSMCVFF 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02943 268 Gene3D - 20 154 IPR036908 -
Viun5g02943 268 Gene3D - 155 199 IPR036749 -
Viun5g02943 268 CDD DPBB_EXPB_N 33 154 - -
Viun5g02943 268 SUPERFAMILY PHL pollen allergen 159 195 IPR036749 -
Viun5g02943 268 PANTHER EXPANSIN-B3 14 194 - -
Viun5g02943 268 FunFam Expansin B3 20 155 - -
Viun5g02943 268 Pfam Expansin C-terminal domain 161 194 IPR007117 -
Viun5g02943 268 Pfam Lytic transglycolase 74 149 IPR009009 -
Viun5g02943 268 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Viun5g02943 268 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Viun5g02943 268 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Viun5g02943 268 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Viun5g02943 268 SUPERFAMILY Barwin-like endoglucanases 27 158 IPR036908 -
Viun5g02943 268 PRINTS Major pollen allergen Lol pI signature 131 146 IPR005795 GO:0005576|GO:0019953
Viun5g02943 268 PRINTS Major pollen allergen Lol pI signature 71 82 IPR005795 GO:0005576|GO:0019953
Viun5g02943 268 PRINTS Major pollen allergen Lol pI signature 109 124 IPR005795 GO:0005576|GO:0019953
Viun5g02943 268 PRINTS Major pollen allergen Lol pI signature 163 178 IPR005795 GO:0005576|GO:0019953
Viun5g02943 268 PRINTS Major pollen allergen Lol pI signature 179 194 IPR005795 GO:0005576|GO:0019953
Viun5g02943 268 SMART dpbb_1 69 149 IPR007112 -
Viun5g02943 268 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 159 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02943 Viun-Chr5 40797261 40803768 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02943 10 194 Expansin Gene Family AT4G28250 69.189 2.37e-92 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02943 K20628 - gmx:100780112 369.007