Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02939 ATGGCCTTAAACCAGTATTTTGAGGACGTTGTGCCCCAGTTGGATTCCTTTGAAGATAAATCATCTCTGAAGACATGGAAATGTGGTGGTGATGATGATATTGCAGATTCAGATAAAAAAGCCTCCAGTGGCTTTGAGTGCAACATCTGTCTGGACTGTGTGCAAGATCCAGTGGTTACTCTCTGTGGTCATCTCTATTGCTGGCCCTGCATTTACAAATGGCTTAACTTCCAAAGTGGCTCCTCCGAAAATGAAGAGAAGCAACAATGTCCAGTGTGCAAATCAGAAATCTCAGAGTCATCACTTGTTCCACTATATGGCCGTGACCAAAGCACACTACCTTCCAAAGGAAAAGGTCACCAAGTAGGGATTGTGATACCAAGAAGACCCCTTGGTCCTTCATGGCTGACCAACTCATCAAGATCACGGGATTCTGAAACTTTTTCCCGACATGTTTATCATCACCGCCATTATCCCAATCATCCTCAACAGTTCAACTCAATTCCTGGCAGTTACCCTTCACCAATGTTCAACGCTGGTGGTTCACTAGCCAATGCATTTGATCCAACATACGGAATCTTTGGAGAGATGATATATGCAAGGGTCTTTGGAAACCAGTTGACTAACATCTACACATACCCAAATTCATATGATCCTTCAGGGAACAGTAATCCAAGGGTCCGAAGGCACTTAATGCAAGTTGATAGGTCACTCAATAGAATCACATTTTTCCTCCTTTGTTGCCTAGTTTTGTGTCTTCTCTTATTCTGA 771 0.4306 MALNQYFEDVVPQLDSFEDKSSLKTWKCGGDDDIADSDKKASSGFECNICLDCVQDPVVTLCGHLYCWPCIYKWLNFQSGSSENEEKQQCPVCKSEISESSLVPLYGRDQSTLPSKGKGHQVGIVIPRRPLGPSWLTNSSRSRDSETFSRHVYHHRHYPNHPQQFNSIPGSYPSPMFNAGGSLANAFDPTYGIFGEMIYARVFGNQLTNIYTYPNSYDPSGNSNPRVRRHLMQVDRSLNRITFFLLCCLVLCLLLF 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02939 256 Pfam Zinc finger, C3HC4 type (RING finger) 47 93 IPR018957 GO:0046872
Viun5g02939 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 107 IPR013083 -
Viun5g02939 256 SMART ring_2 47 93 IPR001841 -
Viun5g02939 256 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 30 107 - -
Viun5g02939 256 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 253 IPR045103 GO:0005783|GO:0006511|GO:0061630
Viun5g02939 256 CDD RING-HC_AtRMA-like 45 95 - -
Viun5g02939 256 ProSitePatterns Zinc finger RING-type signature. 62 71 IPR017907 -
Viun5g02939 256 ProSiteProfiles Zinc finger RING-type profile. 47 94 IPR001841 -
Viun5g02939 256 SUPERFAMILY RING/U-box 42 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02939 Viun-Chr5 40757226 40759756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02939 31 256 C3H Transcription Factor Family AT4G28270 37.339 8.49e-42 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02939 K10666 - gmx:100785491 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g02939 5 40757226 40759756 Viun5g02939 5 40757226 40759756 ECH