Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02932 ATGTCGGAGAGAAATGAGGATAAAGGAAAGAGGATCATCATCGCTGTTTCAACCTTGTTCTTGGTGGCTATAGTTGGGACTATCATATTTGGTATCAACCTCATTCAGAATGGTTCGAATTCAAATTCAAATGGAAATGGAGATAATAAAGAAATTGTTAGTACCAAAAATGAACATGTTGCTGCCACTGTAAAAGCCGTGGAATCCCTTTGTCACCCCACGAATTACAAGGAAGAATGTGAGGAAAATCTCATAGCAGGTGCGGGAAACAGCACAACTACAAATCCATATGAACTCATCAAACTTGCCTTCAATATAACCATCGAAAAAATCAGTGATAAACTCGCAGAAACGAAGGTCTTGCATGACATTGAGAAGGATCCCAGAGCCAAGATGGCACTGGAAACATGCAAACAACTGATGGATCTTTCGGTTTGGGAGTTAGAAAGGGCATTTAGCGGAATGAGCGAGTTGAACCTGTTCACTGTTGATAAACTCCTGATGAACTTAAAAGTTTGGTTAAGTGGTGCACTTACATACCAAGACACTTGCTTGGATGAGTTTGAGAACACAACGAGCGATGCTGGTAAAAAGATGCAGGATTTATTAACCACGGGCATGCATATGACTAGCAATGGTCTTGGCATCATAACAGCGTTGTATGATACTTTCACAAATTTGACTGCCACAAAAGTACTGGGGCGTCGCCTCTTTCAAGATTCTGAGTCACCCTCGTCGGTTGGTAATCGTGGAGGACTAAATGCAACTCTGTTGTTGAATAGCAAGCCTAATGTGACGGTAGCCAAAGATGGCAGTGGAGATTTCAGAACCATCAATGAGGCACTGCAGAAAGTGCCCAAGAAAAACAAAACGCCATTTGTGATCTACATCAAGGAGGGTATCTACCAAGAGTATGTTGAAGTTACAAAGAAGATGAGTCATGTGGTTTTCATCGGTGATGGTGGGAAAAAGACAAGAATAACAGGCAACAAAAACTACATGGATGGTGTCACCACTTATAGATCTGCCACAGTTGCTATTCAAGGAGATTACTTTGTGGGCATGAACATGGGATTTGAGAACTCTGCTGGACCCGAGAAGCATCAGGCAGTGGCATTGAGAGTTCAAGCAGACAAGTCTGTGTTCTACAACTGTTCAATGGATGGGTATCAAGACACACTTTACGTACACGCCATGCGTCAGTATTACAGGGATTGCACCATTTCCGGTACCATCGACTTTGTGTTCGGAAATGCACTTGTGGTTTTCCAGAATTGCACTTTCATGGTCCGAAAGCCAATGGAACATCAACAATGCATTGTGACAGCACAAGGAAGAAAAGAGAAACAACAACCATCTGGAATAGTGATCCAAGGAGGTTCCATTGTGTCCGACCCTGAGTTTCACCCAGTGAGATTTAATAACAAAGCTTACCTAGCTCGTCCATGGAAGAGTTACTCGAGAACCATTTTCATGGATACCTACATCGATGACTTGATTCAAGGTGAAGGGTATTTGCCATGGCAGGGATTAGATGGCCCTACTGGTATGGATACTTGCTTTTATGCAGAGTATCACAACACTGGCCCTGGTTCAGACAAATCAAAGCGTGTGAATTGGAATGGGATTTTGAACCTGAATTCAAAAGCTGCACGTTTGTTCTCACCTTCCAAGTTCTTCCATGGACTCGATTGGGTTCGTGCTACTGGGGTTCCTTGCTTCCCTGGCGTGCCCCCACACTACAGACACAACAAGACCACATTTATATGGTGA 1773 0.432 MSERNEDKGKRIIIAVSTLFLVAIVGTIIFGINLIQNGSNSNSNGNGDNKEIVSTKNEHVAATVKAVESLCHPTNYKEECEENLIAGAGNSTTTNPYELIKLAFNITIEKISDKLAETKVLHDIEKDPRAKMALETCKQLMDLSVWELERAFSGMSELNLFTVDKLLMNLKVWLSGALTYQDTCLDEFENTTSDAGKKMQDLLTTGMHMTSNGLGIITALYDTFTNLTATKVLGRRLFQDSESPSSVGNRGGLNATLLLNSKPNVTVAKDGSGDFRTINEALQKVPKKNKTPFVIYIKEGIYQEYVEVTKKMSHVVFIGDGGKKTRITGNKNYMDGVTTYRSATVAIQGDYFVGMNMGFENSAGPEKHQAVALRVQADKSVFYNCSMDGYQDTLYVHAMRQYYRDCTISGTIDFVFGNALVVFQNCTFMVRKPMEHQQCIVTAQGRKEKQQPSGIVIQGGSIVSDPEFHPVRFNNKAYLARPWKSYSRTIFMDTYIDDLIQGEGYLPWQGLDGPTGMDTCFYAEYHNTGPGSDKSKRVNWNGILNLNSKAARLFSPSKFFHGLDWVRATGVPCFPGVPPHYRHNKTTFIW 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02932 590 CDD PMEI-like_3 69 220 - -
Viun5g02932 590 SUPERFAMILY Pectin lyase-like 261 574 IPR011050 -
Viun5g02932 590 Pfam Plant invertase/pectin methylesterase inhibitor 66 215 IPR006501 GO:0004857
Viun5g02932 590 ProSitePatterns Pectinesterase signature 1. 289 308 IPR018040 -
Viun5g02932 590 ProSitePatterns Pectinesterase signature 2. 408 417 IPR033131 -
Viun5g02932 590 Gene3D - 259 577 IPR012334 -
Viun5g02932 590 Pfam Pectinesterase 264 562 IPR000070 GO:0030599|GO:0042545
Viun5g02932 590 PANTHER PECTINESTERASE 14 567 - -
Viun5g02932 590 Gene3D Invertase/pectin methylesterase inhibitor family protein 61 221 IPR035513 -
Viun5g02932 590 NCBIfam pectinesterase inhibitor domain 60 219 IPR006501 GO:0004857
Viun5g02932 590 FunFam Pectinesterase 259 577 - -
Viun5g02932 590 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 66 221 IPR035513 -
Viun5g02932 590 FunFam Pectinesterase 63 221 - -
Viun5g02932 590 SMART PMEI_2 62 216 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02932 Viun-Chr5 40698665 40701231 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02932 5 577 Carbohydrate Esterase AT3G05610 46.367 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02932 K01051 - gmx:100803527 884.789