LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun5g02930	ATGGGGTGCATAGCTTCCAAGAGTGCAGCTGTTGATGACAGCAGGGAGGGTGTGGCAAGGGAATTAACTTCATCTAGCAGAAGGACATCTGAGATAAAGGCTTCTGCATTGGGTTCCAAGAAAAGGGTCGATGGAGTTTGGGGGAAAGATAAGGTTTTAGATGGTGCTGATATGAAAGTTTCACTAATTGGCAAGGAATCTGGTGGTTCGATGCGGTTGTTTGATTATCAGAATGGGAAGAAGAAAAAGGAGAAACCTGAATCGGCTGTTCATGATCATCCTGGTGTTGGAAGGGTTCCCAAGGGTTTAGAAGGAGAGCAAGTCGCAGCAGGTTGGCCAACTTGGCTTTCTTCTGTTGCTGGTGAAGCTATCCAAGGATGGATACCACGGAGGGCAGACACTTTTGAGAGGTTTGGTAAAATTGGCCAAGGAACCTACAGTTCTGTGTATAAGGCACGTGATTTGACTCACCAAAAGATCGTTGCATTGAAGAGGGTACGCTTTGATAATTTTGATGCTGAGAGTGTCAAGTTTATGGCAAGGGAGATTCTTGTTCTGCGTAGGCTTGACCATCCAAATATAATAAAGCTGGAAGGATTGATAACGTCGCAGACATCTCGCAGCTTGTACCTTGTTTTTGAATACATGGAACATGATCTTACAGGACTTGCATCAAGTCCTAGCATTAAGTTTTCCGAACCTCAGATTAAATGCTACATGCAGCAGCTTCTTAGTGGATTGAATCATTGTCATAGTCGAGGTGTCCTCCACCGTGACATAAAGGGCTCAAATCTTCTCATTGACAATAATGGCACCTTAAAGATTGCAGATTTTGGTCTGGCAAATTTTATTGATCCCCATCACAAGGTTCCATTGACCAGCCGTGTTGTAACTCTGTGGTATAGGCCACCAGAACTCTTACTCGGAGCGTCTAATTATGGAGTTGCAGTAGATCTATGGAGCACTGGTTGCATACTGGGGGAATTATATAGTGGCAGGCCTATTTTGCCTGGAAAAACAGAGGTTGAGCAATTGCATAGGATTTTTAAACTTTGTGGCTCACCGTCTGAAGACTATTGGCGTAAGCTGCGGTCACCACATTCAACAGTATTCAGGCCTCCCCATCATTATAGGCGTTGTGTTGCTGAAACATTTAAAGAATATCCATCTGCTGCCACAAAGCTCATTGAATCCCTACTTGCTTTAGATCCCACACTTCGAGGAACAGCAGCTACAGCCCTGAAGAGTGAGTTCTTTTCAACGGAACCCCTTCCTTGCGATCCATCAAGTTTACCAAAATATCCTCCCTGCAAAGAGATGGACACTAAATTTTGGGAAGAAGCAACAAGGCAAGGAGCTGATGGGAGAAAGGAGAAGAAAAATGGACCAAGAGTTCGGCAAGAGAAAGAACCTCAGACATTTATTTTATCAAAAGACAATGAGGACTGTCGCGTATCAATGCAGCAAGGACAACGCCTTCCTAACTCAAGGAGCCGGAACGAATTCTTCAACCCTCACAGAGAACCTGTTTCTGGACATTTGGTTTTTCCACAGAAAGTGTCAGAGGATCATAAATCATCAGTAAATTATTTCTCCGGGCCTCTTTATCAGAGGCCTATGCATTCAGGTCCATTGGTTCCAGGCAATAGCTGGGAAATGGCTGTAAAGGAAGCTGGTGAGCAGCCCTATGTTTCAAACAAAGCCGCCCTACCAAAACTATCTGGAGTGGCATCTAGGACTTCATTATCCGGAGATAAAAAGGAAAACCATGTTTCTTCAAGACCCCGAGAAGCAATTCAAGCACAAAGATCTTTGGAGTCAACTAATGCTGGATCAGAGTCAAGAAGAAGGCATGATAAGAAGCGCCATTCTCAGAGAATTGATCACAGGCAAATCGAAAACGCTAGAGTCTCCACTCAAACATTAATTCAGGAGGGCCATGGACCCATGGGGAACAATATCTGCCACCTCTCTGGTCCATTACTGGTTTCATCAAACAATGTGGATCAGATGCTCAAAGAGCGTGATCGAAAGATCCAAGAATATTCGAGACGAGCACGAATGAACAAGTCGGGTGAGATAGCTCGTGCAAACCAAAATTAG	2103	0.4432	MGCIASKSAAVDDSREGVARELTSSSRRTSEIKASALGSKKRVDGVWGKDKVLDGADMKVSLIGKESGGSMRLFDYQNGKKKKEKPESAVHDHPGVGRVPKGLEGEQVAAGWPTWLSSVAGEAIQGWIPRRADTFERFGKIGQGTYSSVYKARDLTHQKIVALKRVRFDNFDAESVKFMAREILVLRRLDHPNIIKLEGLITSQTSRSLYLVFEYMEHDLTGLASSPSIKFSEPQIKCYMQQLLSGLNHCHSRGVLHRDIKGSNLLIDNNGTLKIADFGLANFIDPHHKVPLTSRVVTLWYRPPELLLGASNYGVAVDLWSTGCILGELYSGRPILPGKTEVEQLHRIFKLCGSPSEDYWRKLRSPHSTVFRPPHHYRRCVAETFKEYPSAATKLIESLLALDPTLRGTAATALKSEFFSTEPLPCDPSSLPKYPPCKEMDTKFWEEATRQGADGRKEKKNGPRVRQEKEPQTFILSKDNEDCRVSMQQGQRLPNSRSRNEFFNPHREPVSGHLVFPQKVSEDHKSSVNYFSGPLYQRPMHSGPLVPGNSWEMAVKEAGEQPYVSNKAALPKLSGVASRTSLSGDKKENHVSSRPREAIQAQRSLESTNAGSESRRRHDKKRHSQRIDHRQIENARVSTQTLIQEGHGPMGNNICHLSGPLLVSSNNVDQMLKERDRKIQEYSRRARMNKSGEIARANQN	700

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun5g02930	700	FunFam	probable serine/threonine-protein kinase At1g54610	218	459	-	-
	Viun5g02930	700	MobiDBLite	consensus disorder prediction	449	471	-	-
	Viun5g02930	700	FunFam	probable serine/threonine-protein kinase At1g54610	122	217	-	-
	Viun5g02930	700	CDD	STKc_CDK9_like	135	419	-	-
	Viun5g02930	700	MobiDBLite	consensus disorder prediction	77	100	-	-
	Viun5g02930	700	MobiDBLite	consensus disorder prediction	574	634	-	-
	Viun5g02930	700	Gene3D	Transferase(Phosphotransferase) domain 1	218	458	-	-
	Viun5g02930	700	ProSiteProfiles	Protein kinase domain profile.	135	419	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g02930	700	PANTHER	CELL DIVISION PROTEIN KINASE	133	425	-	-
	Viun5g02930	700	MobiDBLite	consensus disorder prediction	595	609	-	-
	Viun5g02930	700	ProSitePatterns	Protein kinases ATP-binding region signature.	141	164	IPR017441	GO:0005524
	Viun5g02930	700	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	255	267	IPR008271	GO:0004672\|GO:0006468
	Viun5g02930	700	Pfam	Protein kinase domain	135	419	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g02930	700	SUPERFAMILY	Protein kinase-like (PK-like)	128	427	IPR011009	-
	Viun5g02930	700	SMART	serkin_6	135	419	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun5g02930	700	Gene3D	Phosphorylase Kinase; domain 1	122	217	-	-
	Viun5g02930	700	MobiDBLite	consensus disorder prediction	1	35	-	-
	Viun5g02930	700	MobiDBLite	consensus disorder prediction	77	99	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun5g02930	Viun-Chr5	40691901	40697286	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun5g02930	127	460	Core Cell Cycle Gene Families	AT5G10270	49.429	1.54e-111	345

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Viun5g02930		Pkinase	2e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun5g02930	-		K08819	gmx:100781209	1195.65