Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02928 ATGCAGCAGCCAAGTTCAATTGGGCAAAGTTTTCCTTCCATTTTCAGTCCCTTGCCAATGTCTCCATTGAAGCTCCTTGTCATTCTTCTTCACACTGCAACCACTTTGTGTTCAGTTTCCACCACCGAATTTGTCTATAACACAAACTTCAACTCCACAAACATCATTTTATATGGAGATGCCTCTGTAGAAACCTCCATTCTGACTCTCACAAATTCGAGTTTCTTTTCCATTGGCCGTGCTTTTTACCCTCACAAAATACCTACCAAAAAAGCCAACTCCCCCACTTTACTCCCCTTTGCAACCTCCTTCATTTTCTCAATTGCTCCCATCAAAAACTTTTTCACTGGCCATGGCTTTGTCTTCCTATTCACATCATCAAGAGGTGTAAATGGTACCACTTCAGCAGAGTATATCGGTCTTTTCAATCGTAGCAACGAAGGCAATCCTCAGAACCATGTTTTTGGAGTTGAGTTTGATATAGTCCAAAATCCAGAAGAGTTCCATGATATTAGTGATAATCATGTCGGTGTTGACATAAACTCGCTTCGCTCTTTAACTTCACATGAAGCTGGTTATTGGGGAGGAAAAGGTGACAAAAAGTTTAAGGTGTTGGAGCTAAACAATGGACAGAACTATCAGGTATGGATTGAATTTATGCACTCTCAACTTAACGTTACCATGACTCGGGCAGGACTAAAGAAGCCTAGAGTGCCTCTTATCAGTAGCAATGTAAGCCTTTCAGGGGTTCTTATGGATGAAACATACGTTGGATTCACTGCAGCAACAGGGAAGATAGTAGACAGTACTAGGATTCTTGCTTGGAGTTTTAGTAATTCAAATTTTTCAATAGGTGTGACCATTATTTTGTGTGTGTTAATCACTGGCTGTGGTTTTGTAGTTTTTTTCATCCTGCGCAGAGGCAAGACACTAGAAAAAGTTGAGGACTGGGAACTGGAGTATTGGCCTCATAGGATTGGTTTCCATGATATTTATGCAGCAACAAGAGGGTTTTCTGAAGAGAATGTGGTTGCTGTTGGAGGGAACGGGAAGGTGTATAAAGGGGTTTTGCATGGAGCAGAAGTTGCAGTGAAGAGAATCCCTCAAGAAAGGGAAGAAGGGATGAGAGAGTTTTTGGCTGAGGTTTCAATTCTGGGCAGAATGAAGCACAAAAATTTAGTAGGATTGAGAGGTTGGTGCAAAAAGGAAAGGGGAAACTTGATTCTAGTTTATGACTTCATGAGCAAGGGAAGTTTAGACAAAAGGATATTTGAGTGTGAAGAGAGAATGGTGCTGACATGGGAAGAGAGGATTCAAGTTCTGAAAAACGTAGCCACAGGGATTCTGTACCTGCATGAAGGTTGGGAAGTTAAGGTCTTGCATGGTGACATTAAAGCATGCAATGTTCTTCTTGACAAGGACATGAATGCAAGGCTGGGGGATTTTGGATTGGCTCGTATGCATGATCATCATGGACAAGTTGCAAGCACGACAAGAGTAATTGGGACAATAGGATACATTGCTCCTGAAGTGATTCGAACAGGAACAGTGTCAACTATGTCTGATGTGTTTGGTTTTGGAATATTGGTACTGGAAGTAATTTGCGGGCGAAGATCAATTGAAGAACATAAACCAGGTCTTACTGATTGGTTGGTGTCTCTAATGGTGCAAGGCCAATTGCAAAGTGCTGTTGATGAAAGGTTGAAGGCTAAATGGGGATACAGCGCAGAGGAAGCTGAAAGATTGCTTCATTTGGGTTTGTTGTGTTCAGATTCTGACCCTAGTATTCGACCAACGATGAGGCAGGTTGTGAAAATGTTGGAAGGGGAAATGGACAACACTGATGAAGAAAACATGGAGATGAGTTTGCTTGGAAAAGTAAAATCAGCTGCAATGTGGTCTAAACCTGAATGTGCTTTTCCTTGCAGTGGTTACCCAACTTTTGATGAAATTAAGATGTTCAGTTTCAGTTCTTGGACTTCTGGGAGTGGCTCGAGTACTTTTCCAGGATCAGAGTCAGAAATCATCAGAGTAAACAGATGA 2043 0.4165 MQQPSSIGQSFPSIFSPLPMSPLKLLVILLHTATTLCSVSTTEFVYNTNFNSTNIILYGDASVETSILTLTNSSFFSIGRAFYPHKIPTKKANSPTLLPFATSFIFSIAPIKNFFTGHGFVFLFTSSRGVNGTTSAEYIGLFNRSNEGNPQNHVFGVEFDIVQNPEEFHDISDNHVGVDINSLRSLTSHEAGYWGGKGDKKFKVLELNNGQNYQVWIEFMHSQLNVTMTRAGLKKPRVPLISSNVSLSGVLMDETYVGFTAATGKIVDSTRILAWSFSNSNFSIGVTIILCVLITGCGFVVFFILRRGKTLEKVEDWELEYWPHRIGFHDIYAATRGFSEENVVAVGGNGKVYKGVLHGAEVAVKRIPQEREEGMREFLAEVSILGRMKHKNLVGLRGWCKKERGNLILVYDFMSKGSLDKRIFECEERMVLTWEERIQVLKNVATGILYLHEGWEVKVLHGDIKACNVLLDKDMNARLGDFGLARMHDHHGQVASTTRVIGTIGYIAPEVIRTGTVSTMSDVFGFGILVLEVICGRRSIEEHKPGLTDWLVSLMVQGQLQSAVDERLKAKWGYSAEEAERLLHLGLLCSDSDPSIRPTMRQVVKMLEGEMDNTDEENMEMSLLGKVKSAAMWSKPECAFPCSGYPTFDEIKMFSFSSWTSGSGSSTFPGSESEIIRVNR 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02928 680 Gene3D Transferase(Phosphotransferase) domain 1 414 630 - -
Viun5g02928 680 FunFam L-type lectin-domain containing receptor kinase S.4 40 285 - -
Viun5g02928 680 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 300 413 - -
Viun5g02928 680 PANTHER - 54 611 - -
Viun5g02928 680 FunFam L-type lectin-domain containing receptor kinase S.4 414 620 - -
Viun5g02928 680 Pfam Protein kinase domain 342 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02928 680 SMART serkin_6 338 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02928 680 SUPERFAMILY Protein kinase-like (PK-like) 315 608 IPR011009 -
Viun5g02928 680 MobiDBLite consensus disorder prediction 661 680 - -
Viun5g02928 680 ProSiteProfiles Protein kinase domain profile. 338 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02928 680 Gene3D Phosphorylase Kinase; domain 1 305 413 - -
Viun5g02928 680 Gene3D - 40 285 - -
Viun5g02928 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Viun5g02928 680 SUPERFAMILY Concanavalin A-like lectins/glucanases 42 280 IPR013320 -
Viun5g02928 680 CDD STKc_IRAK 347 609 - -
Viun5g02928 680 Pfam Legume lectin domain 42 281 IPR001220 GO:0030246
Viun5g02928 680 CDD lectin_legume_LecRK_Arcelin_ConA 42 280 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02928 Viun-Chr5 40686301 40689069 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02928 39 555 Receptor kinase-like Gene Family AT4G04960 53.080 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Viun5g02928 Pkinase 2.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02928 - - gmx:100776006 1128.24