Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02927 ATGTCTTCTCCTACTTTGTTTTTTCTTGTCCTTAATTTGGTTCTTCAAGTTTTGAGTTCTGTGTCCGCAAATGAATTTGTCTACAACAGAAACTTCAACTCCTCTAACGTGAAACTCTATGGGAATGCCACCATCCAGAACTCAGTTCTCACGCTCACAAACAAAACTTTCTTCTCCATAGGACGTGCCTTTTACCCTCACAAAATAAAAACGAAGCCATCGAACTCTTCCACCGTTCTTCCCTTTGCAACTTCCTTCATCTTCTCTGTTGCCCCTTGTGAGAACTTCCCTGTTGCTCATGGTTTTGCTTTTGTTTTCACCCCGGTGATGGCCGTAAATGGAGCACTCTCGGGGAACTACTTGGGTCTGTTTAACCGCTCCACTTCAGGTAACTCCTCCAACCATGTTTTTGCGGTTGAGTTTGATGATTTTAGGAACGAGGAGTTCAACGAGGAGAATGATAATCATGTGGGTGTGGACTTGAATTCGATGATTTCTGAGTATTCTGAGCCTGCTGGGTTCTGGGGTGGGAGAGAGGGCGAGGAATGGGAGGATTTGAAACTGGCTGATGGTAGAAATTATCAGGTTTGGATTGAGTTTGAGGATTCGGTGATTAATGTTACTATGGCACCAGCAGGGAAAAAGAAGCCTCGCAGGCCTTTGATTAGTAAACCTATTAACCTTTCTTGGGTCTTGTTGGATGAAATGTATGTGGGGTTTTCTGGATCAACAGGGAGAATGGTGGACTATTGTAGAATCTTGGCTTGGAGTTTTAGCAATACCAACTTTTCAATTGGTGATGCTTTGAACACCAAGCATTTACCCGTGTATGTGCATCCAAAAACGTTGCTGTTTAGAACAAATGGTTTCATCATAGGTGTAACTTTCGGGGCATTTTTCATGGGGGGTTTCTGTGCTTTGGTGTTTTTCTGTAGTTTGTTCAAAACCAGAAAGGAAGAGAAGCAGGAAAATTTTGAAGACTGGGAATTGGAGTATTGGCCACACAGGATTAGCTATCAGGAGATCTGTGATGCAACAAGTGGATTCTCTGAAGAGAAAGTGATTGGGATTGGAACGAGTGGGAAAGTATACAAGGGAGTTTTGAAGGGAGTAGTAGTTGCGGTGAAGAGCATCAATCACGAGACACAGCATGGAATGAGAGAGTTTCTGGCAGAGATTTCAAGTCTTGGCAGAATGAAGCACAGGAATTTGGTGGGTTTCAGAGGTTGGAGCAAAAGAAAAGGAGGAAAACTTATACTGGTTTATGATTACATGGAGAATGAGAGCTTGGACAAAAGGATCTTTGAGTGTGAAGAGGCAATGCTGCTGAGCTGGGAAGAAAGAGTTAGAGTTTTGCAAAATGTAGCTGATGGGATTTTATACCTGCATGAGGGTTGGGAAGTTGAGGTCTTGCATAGGGACATCAAAGCTTGTAATGTACTACTTGACAAGGACATGAATGCTAGATTGGGGGATTTTGGGCTTGCAAGGCTGCATCGCCAGGAACATGTGGCAGACACAACAAGAGTGATAGGGACTCTGGGGTACATGGCACCAGAACTAGTTCGAATTGGGCGACCGACGGCGGCGTGTGATGTGTTCAGCTTTGGAGTATTGGTTCTAGAAGTGGTGTGTGGGAGAAGACCAATCATAGCAGATCAGCCACCATTGGTTGATTGGGTGTTTTCCCTTATAGAGAAAGGGGAGTTGAATTGTGCTATTGATGAGCGTTTGAAGGGTCAAAGTGGCTATAATGCTGAGGAATCTGAGAGGATGCTTCATTTGGGTTTGTTATGTGTAGGTGATGATCCTGTTTCTAGGCCAACAATGAGGCAAGTGGTGAAAACTTTGGAGGGAATAAAATGCACCGAGTGCAATGAAGAGTGCATCCATTTGGGTCTGCTTGGAAAAATAAACTCAGCAGCATCATGGTCTAAAAGTTCTACAAGTTCTTCCTATGTAAATTATCCTACCTTTGATGAAATTTTGCAGACCAAGTTTTATTCTACAGCATCTTTAAGCGTCTCTTGTCCCAGCCCACAGCCACAGTCAGAGTTTGTCTCAGAAGGAAGGTGA 2076 0.4359 MSSPTLFFLVLNLVLQVLSSVSANEFVYNRNFNSSNVKLYGNATIQNSVLTLTNKTFFSIGRAFYPHKIKTKPSNSSTVLPFATSFIFSVAPCENFPVAHGFAFVFTPVMAVNGALSGNYLGLFNRSTSGNSSNHVFAVEFDDFRNEEFNEENDNHVGVDLNSMISEYSEPAGFWGGREGEEWEDLKLADGRNYQVWIEFEDSVINVTMAPAGKKKPRRPLISKPINLSWVLLDEMYVGFSGSTGRMVDYCRILAWSFSNTNFSIGDALNTKHLPVYVHPKTLLFRTNGFIIGVTFGAFFMGGFCALVFFCSLFKTRKEEKQENFEDWELEYWPHRISYQEICDATSGFSEEKVIGIGTSGKVYKGVLKGVVVAVKSINHETQHGMREFLAEISSLGRMKHRNLVGFRGWSKRKGGKLILVYDYMENESLDKRIFECEEAMLLSWEERVRVLQNVADGILYLHEGWEVEVLHRDIKACNVLLDKDMNARLGDFGLARLHRQEHVADTTRVIGTLGYMAPELVRIGRPTAACDVFSFGVLVLEVVCGRRPIIADQPPLVDWVFSLIEKGELNCAIDERLKGQSGYNAEESERMLHLGLLCVGDDPVSRPTMRQVVKTLEGIKCTECNEECIHLGLLGKINSAASWSKSSTSSSYVNYPTFDEILQTKFYSTASLSVSCPSPQPQSEFVSEGR 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02927 691 CDD lectin_legume_LecRK_Arcelin_ConA 25 261 IPR001220 GO:0030246
Viun5g02927 691 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 311 424 - -
Viun5g02927 691 Pfam Legume lectin domain 24 262 IPR001220 GO:0030246
Viun5g02927 691 SMART serkin_6 349 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02927 691 SUPERFAMILY Protein kinase-like (PK-like) 323 618 IPR011009 -
Viun5g02927 691 ProSiteProfiles Protein kinase domain profile. 349 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02927 691 Gene3D - 23 273 - -
Viun5g02927 691 Gene3D Transferase(Phosphotransferase) domain 1 425 631 - -
Viun5g02927 691 Pfam Protein kinase domain 350 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02927 691 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Viun5g02927 691 ProSitePatterns Protein kinases ATP-binding region signature. 355 376 IPR017441 GO:0005524
Viun5g02927 691 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 264 IPR013320 -
Viun5g02927 691 Gene3D Phosphorylase Kinase; domain 1 310 424 - -
Viun5g02927 691 FunFam L-type lectin-domain containing receptor kinase S.4 425 629 - -
Viun5g02927 691 PANTHER - 41 619 - -
Viun5g02927 691 FunFam L-type lectin-domain containing receptor kinase S.4 22 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02927 Viun-Chr5 40683228 40685877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02927 21 568 Receptor kinase-like Gene Family AT4G04960 54.611 0.0 579
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Viun5g02927 Pkinase 2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02927 - - vum:124844866 1277.31