Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02919 ATGGTTGCCACTCAAAGATTGGAGTTTTCTTTGTGCAAGAAGAGGAGGGGGCTTGAATTTTTGTTTCAGATTGCAGTTGGGTGGTGGGTGGTTCTACTGTTGGTTAATCCTGTGGCGGGTCTCAGACCCTTGAGGGAGAGAACTAGGTCCTGGGATGATGAGCAGCTCTTTACAAGAAAGGACGAGAACAACTTAGGTCCTTTTTCACAATGGAACATAACAGGAACTTACAAAGGGTCTTGGAAATTTTTGGATACCACAAATGGCTCTTCCAGATTTCCAGACATCAGAAAAACAAATGGAAATTCTGTAATTGAGTTAGTTAGTACTCCGACAAAGATAAGCGGAGTACATTATGTTCAGGGGGTGGTTATATTCCATGATGTGTTTGACAATGAATACGATGTCAGTGGTGCCCAAATCAGAATAGAAGGTGTATACATATGGCCTTTTAGACAGCTTCGAATGGTCGCCAACAGTGGAAAAGAGGGGGAGCTGAATCAGAATGAAGATTATATTTTATCTAATCCATATCATCTGCTTGGAGTTTTCTCATCTCAGGTACTGCAAGATTCTTCAAGAGATAGAATGTGGAGAAGAAAACATTCTCTGATTCATGATGCGGAGAAACATTGTAATATCGAAATTGCTGCTCAGGTTTCACGCTTGCCATCATCAAATAACGAAGGTGAACATGATAATTTTCATCTAGAAGGGCTAATGGAGAGCCCCTCTGCGGATGATGATGGGGACTGCTTCTCACCATTACTGCTAAATGCAACGTCTGTCAAAATTGAGGTCTACTATAACAAAGCAGTGAACTATACCTTGATGGTTACTTTTGTTTCTTTCTTGCAAGTCCTTCTATTAATTCGTCAAATGGAGCATAGCAGCACTCAATCTGGTGCTGCTAAGGTTTCAATACTAATGATTGGCCAGCAAGCAATTATGGATGCCTATCTTTGCCTTTTACATCTCACTGCAGGAATACTAGTTGAATCCTTATTCAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTAGTCTTCTCAATATTTGAGATGAGATATCTCCTTGCAATCTGGAAGGCAGGTAGGCCTTTCAGTAATGGTGAAGGTTGGGAAACAATGAGGCGAGAACTTTCAGTTTTATACAGTCGTTTCTATGGGATCTTGTTGGGAGGCATTCTACTCATGTATGAGTTCCATAATTATTTGAGACCTATTCTTCTTCTTATGTACTCTTTCTGGATACCTCAGATAATCACCAATGTTATTCGCGATTCGCGTAAACCATTGCATCCTCATTATATCTTAGGGATAACTGTCACTAGGCTGGCAATCCCATTATATATTTTTGGTTGCCCTAACAACTTCATGCGCATAGAACCAGACAAGAGCTGGTGTGTTTGTTTGGCTGTATTTATTGGACTTCAAGCTGCAATTCTCCTACTTCAGCACTATCTTGGGTCACGTTGGTTCATTCCTCGTCAGATTCTCCCTGAGAAATACAGCTATTATAGGAGGTTTGATCAGGAAACAAGACAGGCTACAGACTGTGTGATTTGCATGACAGCCATTGATCTTTCCCAGCGATCTAATGATTGCATGGTGACACCTTGTGATCATTTCTTCCACTTTGGCTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGTCCAACTTGCCGGCGCCCATTACCCCCTGCCTAG 1713 0.4127 MVATQRLEFSLCKKRRGLEFLFQIAVGWWVVLLLVNPVAGLRPLRERTRSWDDEQLFTRKDENNLGPFSQWNITGTYKGSWKFLDTTNGSSRFPDIRKTNGNSVIELVSTPTKISGVHYVQGVVIFHDVFDNEYDVSGAQIRIEGVYIWPFRQLRMVANSGKEGELNQNEDYILSNPYHLLGVFSSQVLQDSSRDRMWRRKHSLIHDAEKHCNIEIAAQVSRLPSSNNEGEHDNFHLEGLMESPSADDDGDCFSPLLLNATSVKIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSSTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKAGRPFSNGEGWETMRRELSVLYSRFYGILLGGILLMYEFHNYLRPILLLMYSFWIPQIITNVIRDSRKPLHPHYILGITVTRLAIPLYIFGCPNNFMRIEPDKSWCVCLAVFIGLQAAILLLQHYLGSRWFIPRQILPEKYSYYRRFDQETRQATDCVICMTAIDLSQRSNDCMVTPCDHFFHFGCLQRWMDIKMECPTCRRPLPPA 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02919 570 PANTHER RING ZINC FINGER PROTEIN 118 569 - -
Viun5g02919 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 506 570 IPR013083 -
Viun5g02919 570 SUPERFAMILY RING/U-box 502 569 - -
Viun5g02919 570 SMART ringv_2 519 564 IPR011016 GO:0008270
Viun5g02919 570 FunFam E3 ubiquitin-protein ligase, putative 506 570 - -
Viun5g02919 570 Pfam Ring finger domain 519 564 IPR001841 -
Viun5g02919 570 CDD RING-H2_TUL1-like 514 569 - -
Viun5g02919 570 ProSiteProfiles Zinc finger RING-type profile. 520 564 IPR001841 -
Viun5g02919 570 SMART ring_2 520 563 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02919 Viun-Chr5 40488566 40498187 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02919 511 568 C3H Transcription Factor Family AT1G53010 30.508 2.48e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02919 K23788 - gmx:100780140 1082.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g02919 5 40488566 40498187 Viun5g02919 5 40488566 40498187 ECH