Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02918 ATGGTTGCCACTCAAAGATTGGAGTTTTCTTTGTGCAAGAAGAGGAGGGGGCTTGAATTTTTGTTTCAGATTGCAGTTGGGTGGTGGGTGGTTCTACTGTTGGTTAATCCTGTGGCGGGTCTCAGACCCTTGAGGGAGAGAACTAGGTCCTGGGATGATGAGCTCTTTACAAGAAAGGACGAGAACAACTTAGGTCCTTTTTCACAATGGAACATAACAGGAACTTACAAAGGGTCTTGGAAATTTTTGGATACCACAAATGGCTCTTCCAGATTTCCAGACATCAGAAAAACAAATGGAAATTCTGTAATTGAGTTAGTTAGTACTCCGACAAAGATAAGCGGAGTACATTATGTTCAGGGGGTGGTTATATTCCATGATGTGTTTGACAATGAATACGATGTCAGTGGTGCCCAAATCAGAATAGAAGGTGTATACATATGGCCTTTTAGACAGCTTCGAATGGTCGCCAACAGTGGAAAAGAGGGGGAGCTGAATCAGAATGAAGATTATATTTTATCTAATCCATATCATCTGCTTGGAGTTTTCTCATCTCAGGTACTGCAAGATTCTTCAAGAGATAGAATGTGGAGAAGAAAACATTCTCTGATTCATGATGCGGAGAAACATTGTAATATCGAAATTGCTGCTCAGGTTTCACGCTTGCCATCATCAAATAACGAAGGTGAACATGATAATTTTCATCTAGAAGGGCTAATGGAGAGCCCCTCTGCGGATGATGATGGGGACTGCTTCTCACCATTACTGCTAAATGCAACGTCTGTCAAAATTGAGGTCTACTATAACAAAGCAGTGAACTATACCTTGATGGTTACTTTTGTTTCTTTCTTGCAAGTCCTTCTATTAATTCGTCAAATGGAGCATAGCAGCACTCAATCTGGTGCTGCTAAGGTTTCAATACTAATGATTGGCCAGCAAGCAATTATGGATGCCTATCTTTGCCTTTTACATCTCACTGCAGGAATACTAGTTGAATCCTTATTCAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTAGTCTTCTCAATATTTGAGATGAGATATCTCCTTGCAATCTGGAAGGCAGGTAGGCCTTTCAGTAATGGTGAAGGTTGGGAAACAATGAGGCGAGAACTTTCAGTTTTATACAGTCGTTTCTATGGGATCTTGTTGGGAGGCATTCTACTCATGTATGAGTTCCATAATTATTTGAGACCTATTCTTCTTCTTATGTACTCTTTCTGGATACCTCAGATAATCACCAATGTTATTCGCGATTCGCGTAAACCATTGCATCCTCATTATATCTTAGGGATAACTGTCACTAGGCTGGCAATCCCATTATATATTTTTGGTTGCCCTAACAACTTCATGCGCATAGAACCAGACAAGAGCTGGTGTGTTTGTTTGGCTGTATTTATTGGACTTCAAGCTGCAATTCTCCTACTTCAGCACTATCTTGGGTCACGTTGGTTCATTCCTCGTCAGATTCTCCCTGAGAAATACAGCTATTATAGGAGGTTTGATCAGGAAACAAGACAGGCTACAGACTGTGTGATTTGCATGACAGCCATTGATCTTTCCCAGCGATCTAATGATTGCATGGTGACACCTTGTGATCATTTCTTCCACTTTGGCTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGTCCAACTTGCCGGCGCCCATTACCCCCTGCCTAG 1710 0.4123 MVATQRLEFSLCKKRRGLEFLFQIAVGWWVVLLLVNPVAGLRPLRERTRSWDDELFTRKDENNLGPFSQWNITGTYKGSWKFLDTTNGSSRFPDIRKTNGNSVIELVSTPTKISGVHYVQGVVIFHDVFDNEYDVSGAQIRIEGVYIWPFRQLRMVANSGKEGELNQNEDYILSNPYHLLGVFSSQVLQDSSRDRMWRRKHSLIHDAEKHCNIEIAAQVSRLPSSNNEGEHDNFHLEGLMESPSADDDGDCFSPLLLNATSVKIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSSTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKAGRPFSNGEGWETMRRELSVLYSRFYGILLGGILLMYEFHNYLRPILLLMYSFWIPQIITNVIRDSRKPLHPHYILGITVTRLAIPLYIFGCPNNFMRIEPDKSWCVCLAVFIGLQAAILLLQHYLGSRWFIPRQILPEKYSYYRRFDQETRQATDCVICMTAIDLSQRSNDCMVTPCDHFFHFGCLQRWMDIKMECPTCRRPLPPA 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02918 569 ProSiteProfiles Zinc finger RING-type profile. 519 563 IPR001841 -
Viun5g02918 569 CDD RING-H2_TUL1-like 513 568 - -
Viun5g02918 569 PANTHER RING ZINC FINGER PROTEIN 117 568 - -
Viun5g02918 569 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 505 569 IPR013083 -
Viun5g02918 569 SUPERFAMILY RING/U-box 501 568 - -
Viun5g02918 569 SMART ringv_2 518 563 IPR011016 GO:0008270
Viun5g02918 569 SMART ring_2 519 562 IPR001841 -
Viun5g02918 569 Pfam Ring finger domain 518 563 IPR001841 -
Viun5g02918 569 FunFam E3 ubiquitin-protein ligase, putative 505 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02918 Viun-Chr5 40488566 40498187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02918 510 567 C3H Transcription Factor Family AT1G53010 30.508 2.48e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02918 K23788 - gmx:100780140 1078.54