Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02916 ATGGAGGGGTTGGAGGCAAAGGTGGTGGCGAGGGGTGAGAGGTTGAAGAGGGATGTGGTAGATTGTGGTGATAACGAAAAAGGGTACGTGGAGCTTCGGCAGGAGAAGAAGAAGAAGAAGAATAAGAAAGAGTGTGGTGATGGTGGCATGCTGTGTTGTCAAGCGGAGAAGTGCAACGCGGATCTGCATGAGGCCAAGCAATACCACAGGAGGCACAAGGTGTGTGAGTGTCATGCCAAGGCTCAGGTTGTTCTTGTTCATGGCACCAAACAACGGTTCTGTCAGCAATGTAGCAGATTCCACGAGTTGTCTGAGTTTGATGATGCAAAAAGAAGTTGCCGCAGGCGTTTGGCTGTACACAATGAACGGAGGAGAAAGAACTCTTGTGATCAATCTCAAGCAGAAGGGTCAAGCCACCACCACAAAGGGTCAGAGGTCCCTCAACTGAAGGACATTGCTTGTGGTCAGGCTAATGAAAGGGGGAGAACTCATATAACGATACAGGAAAATTCTGCTTACAAAAAGTTTCAAATAAGATAA 540 0.4778 MEGLEAKVVARGERLKRDVVDCGDNEKGYVELRQEKKKKKNKKECGDGGMLCCQAEKCNADLHEAKQYHRRHKVCECHAKAQVVLVHGTKQRFCQQCSRFHELSEFDDAKRSCRRRLAVHNERRRKNSCDQSQAEGSSHHHKGSEVPQLKDIACGQANERGRTHITIQENSAYKKFQIR 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02916 179 Gene3D - 48 114 IPR036893 GO:0003677|GO:0005634
Viun5g02916 179 MobiDBLite consensus disorder prediction 124 149 - -
Viun5g02916 179 Pfam SBP domain 53 126 IPR004333 GO:0003677
Viun5g02916 179 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 37 133 IPR044817 GO:0003677
Viun5g02916 179 SUPERFAMILY SBT domain 51 131 IPR036893 GO:0003677|GO:0005634
Viun5g02916 179 ProSiteProfiles Zinc finger SBP-type profile. 50 127 IPR004333 GO:0003677
Viun5g02916 179 MobiDBLite consensus disorder prediction 124 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02916 Viun-Chr5 40471357 40473610 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02916 48 137 SBP-box Gene Family AT1G53160 66.667 1.05e-38 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Viun5g02916 SBP 2.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02916 - - vum:124838879 330.102