Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02912 ATGACCGGTGTCTGTGCCGACCAGCACAAGTTTCACCAATTCCTCTCTCCAAACAAAACCCTCAGAGAGATCGACATCCCGCCAAGGAAGCTCCTCACTCGCCGCGCCGCCGCTGCATGTGGTGCCTCGGAGCTGTTCTCCGACGACACCGTGCTGCAAAAGTTCCTTCCTTCCAACAGCCTTGATGACTCCGACGAGGACGACCCTTACTCCTCCGACCACTTCAGGATGTTCGAGTTCAAGGTCCGCCGGTGCACCCGCAGCCGGAGTCACGACTGGACTGACTGCCCTTTTGCTCACCCCGGAGAAAAGGCTCGCCGCCGTGACCCTCGGCGGTTTCACTACTCGGGAACTGTGTGTCCTGATTATCGCCGCGGAGGGTGCAATCGTGGTGATGCATGTGAATTCGCTCATGGCGTGTTTGAATGCTGGCTGCACCCTGCAAGATACAGGACTGAGGCATGTAAGGATGGCAAGAACTGCAAGAGGAAGGTGTGTTTCTTTGCACACACACCTCGTCAGCTGAGGATTTTACCGGTAACTTCTCCTTCTTCAAATGACATGTCATGCAAGAAGAACATTAGCAATCTCTTCAACCATGCTTCAAGATCCACCACCACCACCAACAACTGTTGTTTGTTTTGTCATTGTGTTTCTTCTTCTTCCTCTTCTTCATCCACCGCTTCTCCAACTTCAACCCTCTTCAACATGTCTCATTACTCGCCACCGCTATCTCCATCCTCCTCCTCCTCACCACCTCCTTCTCCGTTGAAACCCCGAAAAGGGGTTTCTGTTTCTCCCATTTCCCGCTATGGTGCTGCGAATGTGAACCCTCATCATGGGGTGGTGAGTTACAAAGAAGCCTTCGCTGAATTTGTGAAGTCCTTGGAGGGTTTGAGTTTGAACGAGGGTTCTCCTGTTTCTGGTGCCAAATCATTGAACTTGCCTTGGGTTGATGTTTCTCTGAACTGTGAGGAACAGCAGCAGAAGCAGCAACAACGACAACCACTCATTGCTTCTTCTTTTGGCTGCGAAGATCAGCCGCAGTTTATTTTTTCACCATCCTCCACTCAGACACCGACAAATGTTGCATTTTGCGGCAACAGATTCATGGGCAACGACAACAAGGTTGTCGGTACTGACTCAAATGTCCCAGATCTCGCGTGGGTAAACGAGTTGTTGATGTAG 1188 0.5135 MTGVCADQHKFHQFLSPNKTLREIDIPPRKLLTRRAAAACGASELFSDDTVLQKFLPSNSLDDSDEDDPYSSDHFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPDYRRGGCNRGDACEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVTSPSSNDMSCKKNISNLFNHASRSTTTTNNCCLFCHCVSSSSSSSSTASPTSTLFNMSHYSPPLSPSSSSSPPPSPLKPRKGVSVSPISRYGAANVNPHHGVVSYKEAFAEFVKSLEGLSLNEGSPVSGAKSLNLPWVDVSLNCEEQQQKQQQRQPLIASSFGCEDQPQFIFSPSSTQTPTNVAFCGNRFMGNDNKVVGTDSNVPDLAWVNELLM 395
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02912 395 FunFam Zinc finger CCCH domain-containing protein 66 72 140 - -
Viun5g02912 395 MobiDBLite consensus disorder prediction 246 260 - -
Viun5g02912 395 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 119 139 IPR000571 GO:0046872
Viun5g02912 395 MobiDBLite consensus disorder prediction 240 264 - -
Viun5g02912 395 ProSiteProfiles Zinc finger C3H1-type profile. 115 141 IPR000571 GO:0046872
Viun5g02912 395 PANTHER UNKEMPT FAMILY MEMBER 46 394 IPR045234 -
Viun5g02912 395 Gene3D - 114 177 - -
Viun5g02912 395 SUPERFAMILY CCCH zinc finger 113 143 IPR036855 GO:0046872
Viun5g02912 395 SMART c3hfinal6 114 140 IPR000571 GO:0046872
Viun5g02912 395 SMART c3hfinal6 149 172 IPR000571 GO:0046872
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Viun5g02912 Viun-Chr5 40441291 40442844 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02912 70 178 C2H2 Transcription Factor Family AT5G12850 67.890 2.12e-53 186
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun5g02912 zf-CCCH 1.1e-06 CL0537
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02912 K23047 - gmx:100787049 592.038
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g02912 5 40441291 40442844 Viun5g02912 5 40441291 40442844 ECH