Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02897 ATGGCGTTGTTATTCAAGGATCCGTCGAAGCTTTCGGCGTATCGAGACAGAAGATTCCCCGGAACGCAAGAGGATTTTGAGCATGCGCTTCAGAATTCAACCACCGTTTACGTTGGGAACATGTCGTTTTACACAACGGAGGAGCAAGTTTACGAGCTCTTCTCTCGCGCTGGGGAAATCAAGAAGATCATTATGGGTTTGGACAAGAACACCAAAACACCCTGTGGCTTCTGTTTCGTTTTATATTATTCTCGTGAAGATACCGAGGATGCTTGCAAATACATAAGTGGGACGATACTGGATGATCGTCTTATTCGTGTTGATTTTGATTGGGGGTTCCAGGATGGTAGACAATGGGGTCGTGGGAGGAGTGGTGGCCAGGTCCGGGACGAGTATCGTACTGATTATGATCCTGGTAGAGGAGGTTATGGGAAGCTGGTCCAGAAAGAGTTAGAAGTACAAAGGCAGCTTGTAGATTATGGCACTGGTTCTTTGGGTTCTTTTCCACCAGTTATTCCTAGTTCCTATGGTAGACACGGTGGAGGTCATGGTCATGGACACGGTCATGGTGGTTCTCATCGCCATGGTAGAGATTACTATAGAAAGAGACACCGAGATGATGATCGCCACACACACGAGTCCTCAAAAAGAAATTCAGATCACGAATCTCGGAGGAACACTGACCATGAATCTAGACCGGAAAAAAATCCACGGTTTCGTGAGAGTGGTGATTCTGATGATGACGAGGATGATGATAGAAAAAGACGGGCTTAA 774 0.4638 MALLFKDPSKLSAYRDRRFPGTQEDFEHALQNSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDACKYISGTILDDRLIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEVQRQLVDYGTGSLGSFPPVIPSSYGRHGGGHGHGHGHGGSHRHGRDYYRKRHRDDDRHTHESSKRNSDHESRRNTDHESRPEKNPRFRESGDSDDDEDDDRKRRA 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02897 257 Gene3D - 5 150 IPR012677 -
Viun5g02897 257 MobiDBLite consensus disorder prediction 120 140 - -
Viun5g02897 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Viun5g02897 257 CDD RRM_NCBP2 36 113 IPR034148 -
Viun5g02897 257 MobiDBLite consensus disorder prediction 163 257 - -
Viun5g02897 257 MobiDBLite consensus disorder prediction 124 138 - -
Viun5g02897 257 MobiDBLite consensus disorder prediction 201 257 - -
Viun5g02897 257 SMART rrm1_1 35 108 IPR000504 GO:0003723
Viun5g02897 257 SUPERFAMILY RNA-binding domain, RBD 23 144 IPR035979 GO:0003676
Viun5g02897 257 FunFam Nuclear cap-binding protein subunit 2 4 150 - -
Viun5g02897 257 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 2 255 IPR027157 GO:0000339|GO:0005846|GO:0045292
Viun5g02897 257 MobiDBLite consensus disorder prediction 182 200 - -
Viun5g02897 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02897 Viun-Chr5 40376363 40379833 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02897 31 109 Eukaryotic Initiation Factors Gene Family AT1G49760 29.114 2.97e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02897 K12883 - gmx:100789535 406.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g02897 5 40376363 40379833 Viun5g02897 5 40376363 40379833 ECH