Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02895 ATGCTGGCGGTGTCACCTTTGAGGAGCACAAGAGATGAAGAGCAAGGGGAGATGGAGAGCTTCTCTATTGGAACCGATGACTTTGCTGACTTATCAGAAGGGAACTTGCTTGAAAGCATCAACTTTGATGATCTCTTCATGGGAATCAACGATGATGAAGATGTCTTGCCAGATCTGGAGATGGACCCCGAAATGCTTGCCGAGTTTTCCCTCAGCGAGGAATCGGAGATAGTCTCGTCAGTTTCAGTAGCAAATAACAAATCTGATGACAGGAATGAGAATACTAGGGAGAAACAAGATGAGATTATAGCAGCCAATTTTTCTTCTGATTCTGGTTCGAATTCCGGGTCTAGTAGAGGGGAAGAGATAGCAAGCAAAAGTGATGAATCAACTCATTCAGTGGTGGTGAATCCATCCCCTAAGGAAAGTGAGAAAGGAAGAAAGTCATCCACGCATTCAAGGAATAATCCGCAAGGGAAGAGAAAGGTGAAGGTGGATTGGACCCCAGAATTGCACAGGCGATTCGTGCAAGCAGTGGAGCAGCTAGGAGTGGATAAGGCCGTGCCTTCGAGGATTTTGGAGATTATGGGAATTGACTGTCTCACTCGCCATAACATTGCCAGCCACCTTCAAAAATATCGATCTCATAGGAAGCATTTGCTAGCACGTGAAGCTGAAGCAGCAAGGTGGAGTCAAAGGAAACAATTCATAGGTGGAGCAAGTGTAGGTAGAGGAGGAGGAGGAGGAGGAAAGAGAGACGTGAACCCTTGGCTTGCACCCACCATGGGTTTCCCTCCCATGACACCAATGCACCATTTCAGACCTTTCCATGTATGGGGGCATCACACCATGGACCAGTCCTTCATGCACATGTGGCCTAAACATCTCCCGTATTCACCGTCTCCGCCGGCATGGCCGCCGCGAACAGCTCCATCTCCGCCGCCTCCGGACCCTCTTTACTGGCACCAGCATCAACGGGCTCCAAACGCACCAACCCCAGGAACACCGTGTTTTCCACAGCCTCTGACAAGCACGAGATTTGGGTCTCAAACTGTTCCGGGCATCCCACCACACCATGCAATGTTCCAAATAGTAGATCCAGGCATTGGCATCCCAGCCACCACCCATGGCCAACCACCACCTCGTCCCCTCCTCGATTTTCATCCGTCAAAGGAGAGCATAGATGCAGCTATTAGTGATGTTTTATCAAAACCATGGTTGCCACTACCACTTGGCCTTAAAGGTCCAGCCCTTGATGGTGTAATGGGTGAACTACAAAGACAAGGGATTCCCAAAATCCCTCCTTCTTGTGCTTGA 1317 0.4935 MLAVSPLRSTRDEEQGEMESFSIGTDDFADLSEGNLLESINFDDLFMGINDDEDVLPDLEMDPEMLAEFSLSEESEIVSSVSVANNKSDDRNENTREKQDEIIAANFSSDSGSNSGSSRGEEIASKSDESTHSVVVNPSPKESEKGRKSSTHSRNNPQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAARWSQRKQFIGGASVGRGGGGGGKRDVNPWLAPTMGFPPMTPMHHFRPFHVWGHHTMDQSFMHMWPKHLPYSPSPPAWPPRTAPSPPPPDPLYWHQHQRAPNAPTPGTPCFPQPLTSTRFGSQTVPGIPPHHAMFQIVDPGIGIPATTHGQPPPRPLLDFHPSKESIDAAISDVLSKPWLPLPLGLKGPALDGVMGELQRQGIPKIPPSCA 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02895 438 MobiDBLite consensus disorder prediction 1 26 - -
Viun5g02895 438 NCBIfam myb-like DNA-binding domain, SHAQKYF class 162 216 IPR006447 GO:0003677
Viun5g02895 438 MobiDBLite consensus disorder prediction 103 165 - -
Viun5g02895 438 Pfam Myb-like DNA-binding domain 165 214 IPR001005 -
Viun5g02895 438 SUPERFAMILY Homeodomain-like 160 219 IPR009057 -
Viun5g02895 438 FunFam Two-component response regulator 158 221 - -
Viun5g02895 438 MobiDBLite consensus disorder prediction 103 121 - -
Viun5g02895 438 Gene3D - 159 220 - -
Viun5g02895 438 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 159 218 IPR017930 -
Viun5g02895 438 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 437 IPR044825 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02895 Viun-Chr5 40362944 40366441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02895 27 330 G2-like Transcription Factor Family AT5G44190 44.514 2.76e-59 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun5g02895 Myb_DNA-binding 5.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02895 - - gmx:100775671 667.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g02895 5 40362944 40366441 Viun5g02895 5 40362944 40366441 ECH