Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02893 ATGACGAAGCGAAAGCGAGAAGCGGAAACACCAGATGTGGCTGTTGATCACTACAAAATCCTTGAGGTCGAGAAGAATGCTAAAGAAGAGGAGCTGAGGAGATCGTACAAGAGACTCGCCATGAAATGGCACCCCGACAAAAATCTCACGAACAAGGAAGAGGCTGAATCCATGTTTAAAAAAGTATCTGAAGCGTATGAGGTGTTAAGTGATTCCCACAAGAGGGCACTTTTTGATTGTAGTCTAATGGCTCGGGTGGCACCTGCTGCTCCTGCTGCCTCTTCCACCCAGAAACCTCTCCAAAAAGCTCCTCCAATTGAGCGCAAGTTGTCTTGCACTCTTGAAGAATTATACACTGGAACCACCAAGAAGGTTAATATATGGAGGAAGTTCGGTGAACTTGGTGGTAAGGATGAGGGAGAGGTATTGGTAGTGGAAGTGAAGCCTGGTTGGAAGAATGGCACAAAGATAAAGTATTTGGAGATGGGAATTCGGGTGCCAAATATGATACCAGCTGATCTTGTTTTCATCATAGAAGAAGAACTTCACAGAGTTTATACTAGAGTTGGAGCCGACCTTCTGGTGACCAAAACGATATCCCTTGTTGAAGCCTTGACAGGGTACACTGTGAAACTGGTTACCCTTGATGGAAGAAACTTAACTGTGCCAATCGACAATGTTATTCATCCTGAATATGAAGAGATTGTTGAAAATGAAGGATTGCCTCACCACAAGGATCCAACAAAGAAGGGAAACTTGAGAATAAGGTTCAAAATCACATTCCCACCCGATCTCACTCTTCACCAGAAAGTCGAAATGCGGAAATTTTTGACAGACTGA 840 0.4393 MTKRKREAETPDVAVDHYKILEVEKNAKEEELRRSYKRLAMKWHPDKNLTNKEEAESMFKKVSEAYEVLSDSHKRALFDCSLMARVAPAAPAASSTQKPLQKAPPIERKLSCTLEELYTGTTKKVNIWRKFGELGGKDEGEVLVVEVKPGWKNGTKIKYLEMGIRVPNMIPADLVFIIEEELHRVYTRVGADLLVTKTISLVEALTGYTVKLVTLDGRNLTVPIDNVIHPEYEEIVENEGLPHHKDPTKKGNLRIRFKITFPPDLTLHQKVEMRKFLTD 279
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02893 279 ProSiteProfiles dnaJ domain profile. 16 82 IPR001623 -
Viun5g02893 279 Pfam DnaJ C terminal domain 106 262 IPR002939 -
Viun5g02893 279 SUPERFAMILY HSP40/DnaJ peptide-binding domain 102 194 IPR008971 GO:0006457|GO:0051082
Viun5g02893 279 Gene3D - 183 262 - -
Viun5g02893 279 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 16 277 - -
Viun5g02893 279 CDD DnaJ 16 71 IPR001623 -
Viun5g02893 279 Gene3D - 105 181 - -
Viun5g02893 279 Gene3D DnaJ domain 2 99 IPR036869 -
Viun5g02893 279 SUPERFAMILY Chaperone J-domain 15 84 IPR036869 -
Viun5g02893 279 PRINTS DnaJ domain signature 36 51 IPR001623 -
Viun5g02893 279 PRINTS DnaJ domain signature 18 36 IPR001623 -
Viun5g02893 279 PRINTS DnaJ domain signature 54 74 IPR001623 -
Viun5g02893 279 FunFam Heat shock protein 40 103 181 - -
Viun5g02893 279 ProSitePatterns Nt-dnaJ domain signature. 59 78 IPR018253 -
Viun5g02893 279 FunFam DnaJ subfamily B member 13 183 263 - -
Viun5g02893 279 Pfam DnaJ domain 16 79 IPR001623 -
Viun5g02893 279 SMART dnaj_3 15 74 IPR001623 -
Viun5g02893 279 CDD DnaJ_C 104 265 - -
Viun5g02893 279 Coils Coil 18 38 - -
Viun5g02893 279 SUPERFAMILY HSP40/DnaJ peptide-binding domain 186 270 IPR008971 GO:0006457|GO:0051082
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Viun5g02893 Viun-Chr5 40342030 40344040 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02893 17 79 C2H2 Transcription Factor Family AT1G74250 41.791 3.10e-09 55.5
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02893 K09510 - mnt:21403932 259.225