Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02892 ATGCTTCACCGTAGCCATCAACTATTTTTGTTTCTGCTTCTCTTTCTCTCTCTAAACCCCACTCTCTCTCTAAACCAAGACGGTCTCTTCCTCCTCCAGGCCAAGCTCCAACTCTCCGACCCCACAAACGCCCTCTCCGATTGGAACCACCGTGACGCCACCCCATGCAACTGGACCGCCGTCACATGCGACGCCGCCACCGGCGCCGTCGCCTCCCTTAATTTCGACAACCTCCAGCTCTCCGGCCCCCTCCCGGAAGCCGCACTCTGCCGCCTTCCCTCCCTCGCCAGCCTCTCCATGGCCAACAACAGCCTTGGCGGCACCCTTCCCGACGCCGCTTTCTCCGCCTGCGCCGCCCTCCGAAAGCTCGACCTCTCCGAGAATGCCATCATCGGCCCCATCCCCTCCGCCCTCGCTTTCCTACCCGCCCTCGAAACCCTCGACCTCTCCTCCAACAACTTCTCCGGCGAGATTCCTGCGAGCTTCGGCCAGTTCCGCCAACTCCGAAGCCTCTTCCTCGTCAGCAACCTCCTGAACGGAACCATTCCCTCTTTCCTGGGCAACGTTTCCACGCTCCAAAAGCTTCATCTCGCTTACAACGTTTACTTTGACGCAGGTCACATTCCTCCTTCTTTGGGGAACCTCACGAATCTCGAGGAGCTCTGGCTAGCAGGGTGCAACCTTGTAGGCCCCATTCCTCCTTCTCTAGGAAACTTGACGAAGCTCACAAACCTCGACTTGTCCATAAACAACCTCGTCGGAAACATACCTGAACAACTCGTGTCGGGTTTGCGCAGCATTGTACAAATCGAACTCTACGAGAACGCGCTCTCCGGTGCGTTGCCACGCGCCGCGTTCGCAAACCTTGCTAACTTGGAAAGGTTCGATGCCTCCACGAACGAGTTGACCGGGACGATTCCGGACGAGTTGTGCGGGTTGAAGAAACTCGGGTCGCTGAACCTGTACGCTAATAAACTCGAGGGTACTTTGCCGGAGAGTATAGTGAATTCGGACAACTTGTACGAGTTGAAGTTGTTCAACAACTCACTCTCTGGGTCGTTGCCCAGCGGGTTGGGTGGAAACTCAAAGTTGAAGAGTTTCGACGTTTCCTTTAATCGATTCTCCGGCGAGATTCCGGCGGGGTTGTGCGGCGGAGGAGCGTTGGAGGAGCTGATTTTGATTTACAATACGTTTTCCGGGAGGATCCCCGAAAGTCTCGGGGAATGCAAGAGTTTGAGAAGGGTTCGGCTTAGGAACAATAACCTTTCTGGGGTTGTGCCGGGGGGGTTATGGGGTTTGCCCCATTTGAATTTGTTGGAGCTTGTTGAGAACTCTCTTTCTGGGTCGATTGCTAATGGGATTTCCGGGGCGCGGAGCCTTTCAATTTTGTTAATTTCAGGAAATAATTTTTCTGGGTCGATTCCCGAGGGGATTGGTGAATTGGTTAATCTTGGAGTGTTTGTTGCTAATAATAATAATCTTACTGGCCGGATTCCGACAAGTGTGGTTGGGTTGAGTCAGTTGGATAGGCTGGTCCTCAGCGACAATCAGCTTTTTGGAGAGATTCCTGCTAGTGTTGGTGGTTGGAAGACGCTCAATGAACTTGATTTGGCGAATAATAGATTGGATGGGAGTATTCCTAAGGAGTTATTGGACTTACCTGTGCTTAAGTATCTTGATCTTTCTAATAATCGGTTATCTGGTCTGATTCCAATTGAGCTGCAGAATATGAAGCTGAACTTGTTGAACTTGTCGAACAATCAGTTTTCTGGGGAGATTCCTCCTCTTTATGCCAACGAGTATTATAGAAACAGTTTTCTCGGGAATCCGGGGCTGTGTAGTTCTCTCTCTGGTCTGTGTCCAAGCTTGAATGAGAATGAGGGTAAGGGCAGGAAATATGTGTGGATTTTCCGGTTCATATTTGTGCTTGCTGGGATTGTGCTAATTGTCGGGGTGTCTTGGTTCTACTTCAAATTCCGGAATTTCAAGAAGATGAAAAAGGGGTTTCAGATTTCAAAGTGGAGGTCGTTTCACAAGCTGGGGTTCAGTGAGTTCGAGGTTGTTAAACTGCTAAGCGAGGACAATGTCATAGGGAGTGGAGCATCTGGGAAGGTTTACAAAGTGGCCCTGAGCAATGGTGAGGTGGTGGCTGTGAAGAAATTGTTCGGAGCACCAAACATGGGAAATGGATCTGTTGATTCTGAGAAGGATGGGTTTGAAGTTGAGGTCGAAACACTGGGCAAGATTCGGCACAAGAATATCGTGAGATTATGGTGTTGCTGCAACAGTAAAGACAGCAAGCTCTTGGTTTATGAGTACATGCCAAATGGGAGTCTAGCTGATTTGTTGCACAGTAGCAAGAAAGGCTTGTTGGATTGGCCCACCAGATATAAAATCGCAATCGATGCTGCTGAAGGGCTCTCATATCTGCATCATGATTGTGTGCCCCCTATTGTCCATAGGGATGTCAAATCTAGCAATATCTTGCTAGATGATGAATTTGGAGCAAAAGTAGCAGATTTTGGAGTTGCCAAAATCGTGAATGGAGCCAACCAAGGTGCACAATCTATGTCTGTGATTGCTGGATCTTATGGTTACATTGCACCAGAATATGCTTATACTCTTCGGGTGAATGAAAAGAGTGACATATATAGTTTTGGTGTGGTGATTTTGGAGTTGGTAACTGGGAAGCCCCCTCTTGATCCAGAGTATGGGGAAAAGGATCTAGTGAAATGGGTTTACTCCACAATGGATCAGAAAGGACAAGATGAAGTGATTGATCCAAGTTTGGATGGTGAATATAGGGAAGAAATGAGAAAGGTACTAAGCGTGGGGCTTCTTTGCACTACTTCTCTTCCTATAACTCGTCCTTCAATGCGTAGAGTGGTGAAAATGCTGAAGGAAGTAACTGCACCAGTTCTTCCCAAATCCTTAAGTGGAAAACTCTCTCCTTATTTTCAGGAAGTGCCCTCTGATAATGATCATCAGGGAAGTTTAGTTTGA 3003 0.4878 MLHRSHQLFLFLLLFLSLNPTLSLNQDGLFLLQAKLQLSDPTNALSDWNHRDATPCNWTAVTCDAATGAVASLNFDNLQLSGPLPEAALCRLPSLASLSMANNSLGGTLPDAAFSACAALRKLDLSENAIIGPIPSALAFLPALETLDLSSNNFSGEIPASFGQFRQLRSLFLVSNLLNGTIPSFLGNVSTLQKLHLAYNVYFDAGHIPPSLGNLTNLEELWLAGCNLVGPIPPSLGNLTKLTNLDLSINNLVGNIPEQLVSGLRSIVQIELYENALSGALPRAAFANLANLERFDASTNELTGTIPDELCGLKKLGSLNLYANKLEGTLPESIVNSDNLYELKLFNNSLSGSLPSGLGGNSKLKSFDVSFNRFSGEIPAGLCGGGALEELILIYNTFSGRIPESLGECKSLRRVRLRNNNLSGVVPGGLWGLPHLNLLELVENSLSGSIANGISGARSLSILLISGNNFSGSIPEGIGELVNLGVFVANNNNLTGRIPTSVVGLSQLDRLVLSDNQLFGEIPASVGGWKTLNELDLANNRLDGSIPKELLDLPVLKYLDLSNNRLSGLIPIELQNMKLNLLNLSNNQFSGEIPPLYANEYYRNSFLGNPGLCSSLSGLCPSLNENEGKGRKYVWIFRFIFVLAGIVLIVGVSWFYFKFRNFKKMKKGFQISKWRSFHKLGFSEFEVVKLLSEDNVIGSGASGKVYKVALSNGEVVAVKKLFGAPNMGNGSVDSEKDGFEVEVETLGKIRHKNIVRLWCCCNSKDSKLLVYEYMPNGSLADLLHSSKKGLLDWPTRYKIAIDAAEGLSYLHHDCVPPIVHRDVKSSNILLDDEFGAKVADFGVAKIVNGANQGAQSMSVIAGSYGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGKPPLDPEYGEKDLVKWVYSTMDQKGQDEVIDPSLDGEYREEMRKVLSVGLLCTTSLPITRPSMRRVVKMLKEVTAPVLPKSLSGKLSPYFQEVPSDNDHQGSLV 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02892 1000 Pfam Protein kinase domain 693 911 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02892 1000 Gene3D Ribonuclease Inhibitor 192 262 IPR032675 -
Viun5g02892 1000 ProSiteProfiles Leucine-rich repeat profile. 555 576 IPR001611 GO:0005515
Viun5g02892 1000 FunFam Receptor-like protein kinase HSL1 315 622 - -
Viun5g02892 1000 ProSiteProfiles Protein kinase domain profile. 691 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02892 1000 FunFam Receptor-like protein kinase HSL1 675 773 - -
Viun5g02892 1000 Pfam Leucine Rich Repeat 217 239 IPR001611 GO:0005515
Viun5g02892 1000 SUPERFAMILY RNI-like 298 619 - -
Viun5g02892 1000 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672|GO:0006468
Viun5g02892 1000 SMART serkin_6 691 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g02892 1000 Gene3D Phosphorylase Kinase; domain 1 665 773 - -
Viun5g02892 1000 ProSitePatterns Protein kinases ATP-binding region signature. 697 720 IPR017441 GO:0005524
Viun5g02892 1000 FunFam Leucine-rich receptor-like protein kinase family protein 208 308 - -
Viun5g02892 1000 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 24 189 - -
Viun5g02892 1000 SUPERFAMILY L domain-like 38 379 - -
Viun5g02892 1000 Gene3D Transferase(Phosphotransferase) domain 1 774 974 - -
Viun5g02892 1000 Gene3D Ribonuclease Inhibitor 24 185 IPR032675 -
Viun5g02892 1000 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Viun5g02892 1000 Gene3D Ribonuclease Inhibitor 263 623 IPR032675 -
Viun5g02892 1000 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 206 968 - -
Viun5g02892 1000 Pfam Leucine rich repeat 531 589 IPR001611 GO:0005515
Viun5g02892 1000 Pfam Leucine rich repeat 93 154 IPR001611 GO:0005515
Viun5g02892 1000 Pfam Leucine rich repeat 388 446 IPR001611 GO:0005515
Viun5g02892 1000 SUPERFAMILY Protein kinase-like (PK-like) 690 966 IPR011009 -
Viun5g02892 1000 SMART LRR_typ_2 409 432 IPR003591 -
Viun5g02892 1000 SMART LRR_typ_2 239 263 IPR003591 -
Viun5g02892 1000 SMART LRR_typ_2 313 337 IPR003591 -
Viun5g02892 1000 SMART LRR_typ_2 553 576 IPR003591 -
Viun5g02892 1000 SMART LRR_typ_2 92 116 IPR003591 -
Viun5g02892 1000 SMART LRR_typ_2 141 165 IPR003591 -
Viun5g02892 1000 SMART LRR_typ_2 505 529 IPR003591 -
Viun5g02892 1000 SMART LRR_typ_2 264 288 IPR003591 -
Viun5g02892 1000 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 774 981 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02892 Viun-Chr5 40320732 40324431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02892 20 1000 Receptor kinase-like Gene Family AT1G28440 58.517 0.0 1122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun5g02892 Pkinase 2.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02892 - - gmx:100778128 1508.81