Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02891 ATGACTCAGTGCAGTTACCCTGAAAACAACCACACCGTCATCGTGGAGAGGCACAAAGATAACTTCATCAGAACATGTCCTACATGTGGTCATCATGTCAAATGCCAGGAGCAGGCTGCTGGAATTCATGACTTGCCTGGACTTCCAGCTGGAGTAAAGTTTGATCCTACAGATCAAGAGATTCTTGAGCATTTGGAAGCTAAAGTGCGTTCTGACATTCACAAGCTGCATCCGTTAATCGATGAGTTCATCCCTACTCTTGAAGGGGAGAATGGAATCTGCTGCACCCATCCAGAGAAGTTACCAGGAGTTGGCAAAGATGGGTTGATCCGACATTTCTTTCACAGGCCTTCGAAAGCATACACGACAGGAACAAGGAAAAGGAGAAAGGTGCATACGGATGCTGATGGCAGTGAGACACGGTGGCACAAAACAGGTAAGACTAGGCCAGTCTACATCAGTGGCAAGTTAAAAGGGTACAAGAAAATTCTTGTGCTTTACACCAACTACAGAAAACAAAGAAAGCCTGAGAAGACAAACTGGGTGATGCATCAGTACCACCTTGGCAATAATGAAGAGGAGAAGGAAGGGGAGTTGGTGGTCTCCAAAGTTTTCTATCAGACACAGCCTAGACAATGTGGTTCACTCATGAAAGACTCGTATTCTGCTAAACTAAACGGTGAAAGTGTGCATGAGGTAACTAATCATAAAAGCACTGGGTTTATTGAATTCTACAATAATTCGTTTGTATCCTTTGAGCAAGGGGACCAGCATAGGCCTAGCAGTGCACAACTAGTCACCCACTTCCCTGTTCATGATGGTGCTACTTTCATTCCTTGA 840 0.4476 MTQCSYPENNHTVIVERHKDNFIRTCPTCGHHVKCQEQAAGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICCTHPEKLPGVGKDGLIRHFFHRPSKAYTTGTRKRRKVHTDADGSETRWHKTGKTRPVYISGKLKGYKKILVLYTNYRKQRKPEKTNWVMHQYHLGNNEEEKEGELVVSKVFYQTQPRQCGSLMKDSYSAKLNGESVHEVTNHKSTGFIEFYNNSFVSFEQGDQHRPSSAQLVTHFPVHDGATFIP 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02891 279 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 18 237 IPR044799 GO:0003700
Viun5g02891 279 FunFam NAC domain-containing protein 73 57 211 - -
Viun5g02891 279 SUPERFAMILY NAC domain 43 207 IPR036093 GO:0003677|GO:0006355
Viun5g02891 279 ProSiteProfiles NAC domain profile. 48 207 IPR003441 GO:0003677|GO:0006355
Viun5g02891 279 Gene3D NAC domain 57 211 IPR036093 GO:0003677|GO:0006355
Viun5g02891 279 Pfam No apical meristem (NAM) protein 49 188 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02891 Viun-Chr5 40313578 40315813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02891 24 224 NAC Transcription Factor Family AT4G28500 80.198 1.01e-117 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun5g02891 NAM 5.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02891 - - gmx:100791648 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g02891 5 40313578 40315813 Viun5g02891 5 40313578 40315813 ECH